BAC Information

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BAC

Clone NameMSMg01-131B15
Chromosome3 (Build37)
Map Location 119,452,630 - 119,452,920
singlet/doubletsinglet
Overlap genePtbp2
Upstream geneDpyd, LOC100043275, LOC100043278
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131B15.T7 (MSMg01no131_b15.b1)MSMg01-131B15.TJ (MSMg01no131_b15.g1)
ACCAG338689AG338690
length734726
length of high quality
(start - end)
233 (127 - 359)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no131_b15.b1 PHD_FILE: MSMg01no131_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:12 2005CHROMAT_FILE: MSMg01no131_b15.g1 PHD_FILE: MSMg01no131_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGACCGCG
GAATTCATTATTTATCACAAAGCTCCAGTAATTTTTATAATTCTCTTTTT
TGCTTTTAAAAAAAATCTCAATACTTTTCTTTTTACTTCATAGCACCAGC
CAGAATCTTCCAGCTCACTTTTCTCAGGTTTTGTTTTTGTTTTTATTGTT
GTTTGCTTTTTTTTTTTTGTCTTTAGATATGGCTTTATTGTGTTGCTTTG
CAAGCCTTGGGCTCCTAAGCTCAAAGAATCTATCCTCCTGCCTCACCATC
AAAAGGGTTGAGAGTCCCCATGTGTATGAGTCTCTGTAGAAAGCAGCTAC
TAGAGAAAACTTATTTCAAGCTGACTTTTCTCAGCTGAGTGTTGATTTTC
TTGTTGGTTCCTCTCAATGCCAGGCAATGCTTAAGATCCACTCAGTGCTG
GGTTTAGAAAGAGCAGAGTTTGTCCCTAGCAACGTCATCGCATATAGAAA
CAAAACAGTCAAAGCTTTAACAAACTGANAAGCACAAATAGATTAAAACG
TGATTGCACTCTAGAATAAAAGCTAACTGCCCATCAATAATCAATCCCTG
GACTGTAAAGTAAACTAAGCCAAATAAAATTTTTTTTCTGTTTGGCGAAA
AGAAAGCCTAAGATAAGGGAATGAATATTGATCAATTTTCTTTCATATCT
ATCCCCAATTTATATTATAAGAAGCTACCCTTTA
ACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAAAAATCAAGGTTCCTTGGATTTCAATTCCAACATCTGC
TATTAGGCATCTTGTGTCTTTCTTTATAGATAGGTCTTTTGCTACATAGC
CCAGACTGGCCTTACCCACATCTAAAAGTGAGAGCACAGTGGCAGCAAAA
ACTTCAAGCAAGAGAAACCTCATCCAGCTAGAGGACTAACACATCGTTAC
TTTTTGAAATTACACTGCGGTAAAAGTCTAGGCAAACAGATGGCTGTAAG
GGAGGAGACACAGTAGGTGTTCTAGGCCTTTATCTAACCAAGCAAAAAAA
AAAAAAAAAATAGGACATGACGCACGAGAATAACTTAGTGGGACTCAATG
CAAATAACTGGGTCATCTAAGCGACAGTAGCAGCAAGGAATAGAGAAAAG
TGTACAGGTCACAATAAAGAGTGAACTCATAGGTCTTGATCATATAATAA
ATGGCTATAGCCAAACATGAATTTACTTGCCTCTCTATTATGAAATGCCA
AAATACTTGTAAGTGAATAATAATGTAACAAACACTAAACATTAGGCTGA
AAATGATTTTTGTCAAATTCCAGGAATAACAACAAAAAAATGAAAATACA
CAGCAAGTTTCAACTTATCCCTGGCAACAACTTGGCCTTAACAAACCCAA
ATATTAACCAAAAACCTAGGATTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_b15.g1 MSMg01no131_b15.g1 CHROMAT_FILE:
MSMg01no131_b15.g1 PHD_FILE: MSMg01no131_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:13 2005
         (291 letters)



>mm_chr3_119452430_119453121
          Length = 692

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttccttggatttcaattccaacatctgctattaggcatcttgtgtctttctttataga 60
           |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ggttccttggatatcaattccaacatctgctattaggcatcttgtgtatttctttataga 260

                                                                       
Query: 61  taggtcttttgctacatagcccagactggccttacccacatctaaaagtgagagcacagt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtcttttgttacatagcccagactggccttacccacatctaaaagtgagagcacagt 320

                                                                       
Query: 121 ggcagcaaaaacttcaagcaagagaaacctcatccagctagaggactaacacatcgttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagcaaaaacttcaagcaagagaaacctcatccagctagaggactaacacatcgttac 380

                                                                       
Query: 181 tttttgaaattacactgcggtaaaagtctaggcaaacagatggctgtaagggaggagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttgaaattacactgcggtaaaagtctaggcaaacagatggctgtaagggaggagaca 440

                                                              
Query: 241 cagtaggtgttctaggcctttatctaaccaagc-aaaaaaaaaaaaaaaaa 290
           ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 cagtaggtgttctaggcctttatctaaccaagccaaaaaaaaaaaaaaaaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)