BAC Information

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BAC

Clone NameMSMg01-131E08
Chromosome3 (Build37)
Map Location 67,943,461 - 67,943,761
singlet/doubletsinglet
Overlap genenone
Upstream geneRsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
Downstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131E08.T7 (MSMg01no131_e08.b1)MSMg01-131E08.TJ (MSMg01no131_e08.g1)
ACCAG338816AG338817
length720755
length of high quality
(start - end)
515 (73 - 587)301 (72 - 372)
definitionCHROMAT_FILE: MSMg01no131_e08.b1 PHD_FILE: MSMg01no131_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:26 2005CHROMAT_FILE: MSMg01no131_e08.g1 PHD_FILE: MSMg01no131_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGTTTTCTAATGCTGAGTAGTACTCCATTGTGTAAATGTAC
CACATTTTCTGTATCCATTCCTCCGTTGAGGGACATCTGGGTTCTTTCCA
GCTTCTCCATCCCATATACAACCACCAAACCCAGACACTAGTGCATATGC
CAGAAAGATTTTGCTGACAGGACCCTGACATAGTTCTCTTGTGTGAGTCT
ATGCCAATGCCTGGCAAATACAGTCATCTATTGGATAGAACACAGGGCCC
CTAATGAAGGAGCTAGAGAAAGTACCCAAAGGCTAAAGGGGTCTGCAACC
CTATAGGAGGAATAACGATATAAACTAACCAATACCCCCAGAGCTGTGTC
TCTTGTTGTATATGTACCACAGGGTGGCCTAGTTGGCCACCAATGGGAGA
AGAGGCCCTTGGTATTGTGAAGATCATATGCCCCATTACAGGGGAATGTC
AGGGCCAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAGGGTGGGTGGAGAG
CATAGGGGGCTTTGAAAATAACATTTGAAATGTAAATGACCAGAGTATCT
AATTAATAAAAAAGACTGAACAAATGTCTCTCCTCAGCACCTAGAGCAGC
CACAAATCTCTGCATTTACCACTGCCCATGACCAACAAAAGCCTCTTTGA
GGAAGGTTGAAAGTAGAATN
NCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXTTCATGAGTTGAGGTGAA
CTATAGAAGTTTCCTGAAATTCAAGTGATATCCAGCTATTAGACAGTCAT
CTCTTTATCCTGAAACACCTCTGTCTTGTTAGAGCTCAATCTCCAAATTT
GTAGTAAAGTGTTTTTGATCTGAAATCTGATCTAACCCAATTCAAATAGT
GCAGTGAAATTATGGGAAAGCAATGGAAAAAACTCGGCTGGTTGTTCAGA
TTTATTTTCCTTCAGATATTCAATTTAGTTTAAAAGAATTGAATTCATTT
GCCATGTTCTTTTTGGGAAGCATTGTGAGAAGTATAATTTAAAACTGCGC
TCTCTTTTGCATGGCCTCTGCAAGAAATAAAAGGGGGCTCACAATACGTG
TTTCTCCTATAATGAGGGCTCTGTTCGGTCTGTCTGCCTCTGTGTGAATT
GCTCCTTCAGACAGAACAGTAGTACTGTAATGAGTCATAATTCTTGCAGG
GCCTAAATTGCTCCTATGGAGTATAAGAGATTTCTTTACATGCATAACAC
ATTCAAAACCCAGATACTCTGTCAAACAGTTGTTTATGGCTAAAAAAAAC
CCTTTTTTGCTGGCATAACCTGCCTCATATTGTTGTGGTGAGAAATTCTC
TCCAAACATATCTTTTCCCCATGTTTATATACACAATAAAAAACTCTATC
ATCAGCCATCATCTTCGGTCACCAGCCAGCACTTCAAACTACTTCTACTA
CCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_e08.g1 MSMg01no131_e08.g1 CHROMAT_FILE:
MSMg01no131_e08.g1 PHD_FILE: MSMg01no131_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:26 2005
         (301 letters)



>mm_chr3_67943261_67943961
          Length = 701

 Score =  574 bits (297), Expect = e-168
 Identities = 300/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtgatatccagctattagacagtcatctctttatcctgaaacacctctgtcttgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtgatatccagctattagacagtcatctctttatcctgaaacacctctgtcttgtta 442

                                                                       
Query: 61  gagctcaatctccaaatttgtagtaaagtgtttttgatctgaaatctgatctaacccaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagctcaatctccaaatttgtagtaaagtgtttttgatctgaaatctgatctaacccaat 382

                                                                       
Query: 121 tcaaatagtgcagtgaaattatgggaaagcaatggaaaaaactcggctggttgttcagat 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tcaaatagtgcagtgaaattatgggaaagcaatggataaaactcggctggttgttcagat 322

                                                                       
Query: 181 ttattttccttcagatattcaatttagtttaaaagaattgaattcatttgccatgttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattttccttcagatattcaatttagtttaaaagaattgaattcatttgccatgttctt 262

                                                                       
Query: 241 tttgggaagcattgtgagaagtataatttaaaactgcgctctcttttgcatggcctctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgggaagcattgtgagaagtataatttaaaactgcgctctcttttgcatggcctctgc 202

            
Query: 301 a 301
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)