BAC Information

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BAC

Clone NameMSMg01-131F17
Chromosome3 (Build37)
Map Location 115,637,962 - 115,638,192
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfm3, EG546808, Edg1, Dph5
Downstream geneLOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131F17.T7 (MSMg01no131_f17.b1)MSMg01-131F17.TJ (MSMg01no131_f17.g1)
ACCAG338882AG338883
length731720
length of high quality
(start - end)
231 (128 - 358)---
definitionCHROMAT_FILE: MSMg01no131_f17.b1 PHD_FILE: MSMg01no131_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:33 2005CHROMAT_FILE: MSMg01no131_f17.g1 PHD_FILE: MSMg01no131_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTATGTCATGTTACTTCCCCTGACGAGAATTAGTATAAAGG
TCGCACTGGCTTAGGAATATTCCCCAAGGCTAAGTTAACACATCTGTTAG
CTTGAGACTTGTCGGACACAGCACTGTGGTGGCTGATAGCCAGCAGCTAG
GGAAACCAACAGAAGTGTCAACTCCTGGAAAGAGCAGATTTTAGTTTTTA
TTGGAAAAGCTATGGCTTCAAAAAGACAACTAATCTCTCTCCTGCATAGG
TGAGGGTGCAGTCCCACTCAGGATATGATGAACTGAAGAGTAGTAAGACT
GCCAGGCTCCTGTTTGTTTCCCCCCCCCCCCAGCCCAGGGTACCGTGGGG
TAGGGCGAGACTGAGGGGCACAGAGAACACAGAAGAACCATGTGAGTAAT
TTATGAACTCCAAGGATCACCTTCAACTCATTAATGCTTTGATGTTGATC
CTACTTAGCAAACTGAAAAAGCCCTATCCAACTCCCCAAGTTCCAGACTA
TGTATAACAATCTACTCGGGGTCCGACCTGCGGTCTTTTGACCTGTGTAC
TAGAATGGTTATACAAGCACTCACACCCTGCCCTTCACCACGTTGCTTGC
TTCTGAGAACCGAACGGCTGACTTTACCCCCGAGTTTTAATGGACTTTGG
ACCTATTATTTGATATTCTGACCATTCAGTT
CCCCGATGTAGTGAGAGCCCAGGAGGCGCCTTGTCTGGACCCGANGGNGA
ACNANAGAATTTTCGNGACGCGGGGNANAACAGACNAGAANGAGAAGAAA
AAGAACAANGGAGGATACCCCCAGCCAGCGGAAAAAAAGAGNNAAAACGA
CAAGGCAACCAAAGAACCACAGAGCAGAACACNGGGCCAGCAGGCGAAAA
ACCCAGGGNCNCACCCGAAAAGAAGGCACACACGCGCACGCACACACACT
TTTTATGGACAAGAAGGAAAGCAGAAAANATTCAGAACTCGGGTAGATCA
GGAAGGAAGCAGGTTATTTTTTTTTGAGACGCAAGGCAAGGACCACCACC
AGCAGCCTATCATACCCCACCGAACCAAGTACAGTTAATTGAAACCAGAA
AACCATCGAGTAACACAGATGGAATGAATTTGAACCAAGACTTCGGTAAA
GGGCAGTATAGAGAACAGCAAAATGGAGGAAGATCTGCGAGGGTCTTCCT
GCTCACACTGAACTACAGGGAAGCTGGCACAAGTCCCGAGGCTTTGGACT
GGTACGTTTAACTGAAAATGAAGTATTCTCCGATACTAGGGAAACAGAAA
TTGTGTCAGATTTACAAAGATGACGAGTTCAAATTTTGGACCCTTTGATA
TTATTTTTTTCTGTTTTTAAGGAAGCCCGAACTTCCACGATCGAACCTGC
TGCCCACTAGGTTCCCTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_f17.b1 MSMg01no131_f17.b1 CHROMAT_FILE:
MSMg01no131_f17.b1 PHD_FILE: MSMg01no131_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:33 2005
         (231 letters)



>mm_chr3_115637762_115638392
          Length = 631

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctaagttaacacatctgttagcttgagacttgtcggacacagcactgtggtggctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggctaagttaacacatctgttagcttgagacttgtcggacacagcactgtggtggctgat 372

                                                                       
Query: 61  agccagcagctagggaaaccaacagaagtgtcaactcctggaaagagcagattttagttt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agccagcagctacggaaaccaacagaagtgtcaactcctggaaagagcagattttagttt 312

                                                                       
Query: 121 ttattggaaaagctatggcttcaaaaagacaactaatctctctcctgcataggtgagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttattggaaaagctatggcttcaaaaagacaactaatctctctcctgcataggtgagggt 252

                                                              
Query: 181 gcagtcccactcaggatatgatgaactgaagagtagtaagactgccaggct 231
           |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 251 gcagtcccactcaggagatgatgaactgaagagtagtaagactgccaggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)