BAC Information

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BAC

Clone NameMSMg01-131H06
Chromosome3 (Build37)
Map Location 95,274,524 - 95,275,012
singlet/doubletsinglet
Overlap geneArnt
Upstream gene2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305
Downstream geneCtsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131H06.T7 (MSMg01no131_h06.b1)MSMg01-131H06.TJ (MSMg01no131_h06.g1)
ACCAG338951AG338952
length747719
length of high quality
(start - end)
---489 (76 - 564)
definitionCHROMAT_FILE: MSMg01no131_h06.b1 PHD_FILE: MSMg01no131_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:40 2005CHROMAT_FILE: MSMg01no131_h06.g1 PHD_FILE: MSMg01no131_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCANGAGGAGGC
GCGGAATTCCAGCCATTTTCTGAAAAAAAGCTGTGATATTTTTGTTATTA
TTTTATATCATACTACATGAACTCAACCCTAGGGACAGAGAGAGATGGGG
GTGTGCTGTGTTGTTGTTCAAGCAGTGCTTGCGGCTGAATATACGGCCTT
GAACACACTAAGAAGTGCTGCTCTACTACTGAGTCCCATCCCTCACCCAA
TAGAGTATTTCATTAGTTACTGATATCTAATTTTTATTTTTGTTGTAGTT
GTTGTTTATTCAATATTAGTGCCATTGTTTGTCTAAGGAGGCCACAGGAC
AATTTGTAAGTTAGTTCTTGCCTACCACCCGCGCCCTTTTTGGACTGAAC
CCAGGTAATTATGCTTGAAACACATTCCCTGCAGAAACATTTCCCTTGCT
CTAAATGCCTTAACCTAAACACCAAATAACTAGTTTCTATTTCAAGATTT
ATAAACATATCTAGTGAATATCTATGAATTTTCCATTAGACTGTTTATGT
ATTGAAAACTTTTCATGCCTCATCCTTGATTCCCATACGAATATTATATG
TGCCTTTGATGAAAATCTACTTTCTATTTGCTTCCCTCCTTTTGTGTTTT
AATATTGTAAATATAAAAAATTAAATAGATTATCAAAACTAAACTTCCTA
TCTTTCCTTCTACTACATAGAGTTCCCGGAATATACAACAGCATTAG
CTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCCCTTAGCTATAAGTGATCAAGT
ATTGGGGGAGTGAGAATAGATAAATTTAGTTGTGAGAACTTATTTAGCAA
GGTGTCAGGTATTTTAGAACTTGGCTCATACAAATGGCCTTTGAAGTGAA
AGAAGGGTGTATCCCCAGAGAGTTTGCCACACTCATGGATCAGTGTTCCT
TGGGTTAGATTTCTAGAGCATGGAAGAAATCTGCCTCACCCTTGAAGCAA
CTTTTAGTCTTAACGATGAGAGACTTGTAGTAAACAACCCCTGTTGCTCC
ATGATATGTTTTGTTACACTTGATATATCATGAGGAAAACAGAAAGGGCA
GAAATACTTGCCATCATTCAGGAGCCCCATCTAAGAGTTATCTCACTATT
GCCAGGAGAGAGAACTAAGTGTGAATAGAGTAAACGGGTGAGTAGTAAGA
TACCTAAGTGAAAAACGATGGGAAGAGGCATGCGGAAAAGAGCCGGTGTC
TTTGTTAATAGTTTGTGTGTGATAGATATACAATGGTGGCATGTCTAACT
TTATTTAGCCTCTCTAGACTTGACTGATAATGACTAGGATAGATAAGTTA
CATTTCATTTAAAAATCCACCGATTGGGCAGTGCATAGTGGTGAATGCCT
TTTATCCCCAGTACTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_h06.g1 MSMg01no131_h06.g1 CHROMAT_FILE:
MSMg01no131_h06.g1 PHD_FILE: MSMg01no131_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:41 2005
         (489 letters)



>mm_chr3_95274324_95275212
          Length = 889

 Score =  876 bits (453), Expect = 0.0
 Identities = 480/489 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcccttagctataagtgatcaagtattgggggagtgagaatagataaatttagttgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcccttagctataagtgatcaagtattgggggagtgagaatagataaatttagttgtga 260

                                                                       
Query: 61  gaacttatttagcaaggtgtcaggtattttagaacttggctcatacaaatggcctttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 261 gaacttatttagcaaggtgtcaggtattttagaacttggctcatacaaatgacctgtgaa 320

                                                                       
Query: 121 gtgaaagaagggtgtatccccagagagtttgccacactcatggatcagtgttccttgggt 180
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaaagaagggtgtgtccccagagaggttgccacactcatggatcagtgttccttgggt 380

                                                                       
Query: 181 tagatttctagagcatggaagaaatctgcctcacccttgaagcaacttttagtcttaacg 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatttctagagcatggaagaaatctgcctcacccttgaagcaacttttagtcttaacg 440

                                                                       
Query: 241 atgagagacttgtagtaaacaacccctgttgctccatgatatgttttgttacacttgata 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagagacgtgtagtaaacaacccctgttgctccatgatatgttttgttacacttgata 500

                                                                       
Query: 301 tatcatgaggaaaacagaaagggcagaaatacttgccatcattcaggagccccatctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcatgaggaaaacagaaagggcagaaatacttgccatcattcaggagccccatctaag 560

                                                                       
Query: 361 agttatctcactattgccaggagagagaactaagtgtgaatagagtaaacgggtgagtag 420
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 561 agttatctcactattgccaggagagagaactaaatgtgagtagagtaaacgggtgagtag 620

                                                                       
Query: 421 taagatacctaagtgaaaaacgatgggaagaggcatgcggaaaagagccggtgtctttgt 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagatgcctaagtgaaaaacgatgggaagaggcatgcggaaaagagccggtgtctttgt 680

                    
Query: 481 taatagttt 489
           |||||||||
Sbjct: 681 taatagttt 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)