Query= MSMg01no131_k14.b1 MSMg01no131_k14.b1 CHROMAT_FILE:
MSMg01no131_k14.b1 PHD_FILE: MSMg01no131_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:57 2005
(639 letters)
>mm_chr3_39398327_39399365
Length = 1039
Score = 1027 bits (531), Expect = 0.0
Identities = 615/659 (93%), Gaps = 28/659 (4%)
Strand = Plus / Plus
Query: 5 gaattcatattgcctgagc-ttcaagtatcaaaagcatctgattagtttgggagagattt 63
|||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 179 gaattcatatagaatgagcattcaagtatcaaaagcatctgattag-ttgggagagattt 237
Query: 64 ttggtatttatcctccatgtttaattgaatgaaagtttaaaaa--aattatattcacaat 121
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 238 ttggtatttatcctctatgtttaattgaatgaaagtttaaaaagaaattatattcacaat 297
Query: 122 aataaaaataatattttcatataaactaaaaacttacataaaacatagataacatattat 181
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||
Sbjct: 298 aataaaaataatattttcatataaactaaaaacttacatgaaacatacataacatgttat 357
Query: 182 catagattcaaatagtaaatgctctaacacacaca------------------------c 217
||||||||||||||||||||||| ||||||||||| |
Sbjct: 358 catagattcaaatagtaaatgctgtaacacacacagacacacacagacacacacacacac 417
Query: 218 acacacacacacacacacacacacactatattccaatgtggtataatgggtgcttaccct 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acacacacacacacacacacacacactatattccaatgtggtataatgggtgcttaccct 477
Query: 278 aacaggtgtcagttcttattgactgaaaaggttataaaagtattagtaaataaataagat 337
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 478 aacaggtgtcagttcttattgactgaaaagtttataaaagtattagtaaataaataagat 537
Query: 338 gaatggctgacttaaatgcaaaatacagagaggaattacataggatacatacataagatg 397
|||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 538 gaatggttgacttgaatgcaaaatacagagaggaactgcataggatacatacataagatg 597
Query: 398 tgatttatattacatcaaaagatatcagaagccatttacaatgctggctgatttgtggac 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgatttatattacatcaaaagatatcagaagccatttacaatgctggctgatttgtggac 657
Query: 458 tatgtatatattgtttagtcatactctgatatgtatgtcagtattaaccccaaattagaa 517
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 658 tatgtctatattgtttagtcatattctgatatgtatgtcagtattaaccccaaattagaa 717
Query: 518 taaataggctatgccctttaagatgcacaacataattattttgttctgttttatgctttc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 718 taaataggctatgccctttaagatgcacaacataattattttgttctgttttatgttttc 777
Query: 578 atctctagaagtctctacaatacagtaagacttcatgttacattagattgttattttta 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atctctagaagtctctacaatacagtaagacttcatgttacattagattgttattttta 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_k14.g1 MSMg01no131_k14.g1 CHROMAT_FILE:
MSMg01no131_k14.g1 PHD_FILE: MSMg01no131_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:58 2005
(349 letters)
>mm_chr3_39483279_39484027
Length = 749
Score = 650 bits (336), Expect = 0.0
Identities = 345/348 (99%)
Strand = Plus / Minus
Query: 1 cagttagtcatccaagatcactaagtagaagatgcaggacctatattgcaaagaaaacat 60
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 548 cagttagtcatccaagatcactaagtagaagatacaggacctatcttgcaaagaaaacat 489
Query: 61 tgaagaaaataaatgccaaacatatagaaatattggaacagtgcaccatcatttctgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgaagaaaataaatgccaaacatatagaaatattggaacagtgcaccatcatttctgagg 429
Query: 121 aaaatttaagttttcattaaggattgtgaatgcttcttcttaacaaggcaaaatagcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaatttaagttttcattaaggattgtgaatgcttcttcttaacaaggcaaaatagcaaa 369
Query: 181 ataccagtagtcactacattaaactcagagggaacgaggcaggagacgctggtacttgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ataccagtagtcactacattaaactcagagggaacgaggcaggagacgctggtacttgga 309
Query: 241 gccagctcagctcatgcactgaacttttacatttacatctcagtctattaaatatggaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gccagctcagctcatgcactgaacttttacatttacatctcagtctattaaatatggaaa 249
Query: 301 gggaaaacttttcctttctcagaaaagatcaagactgtcccctgctta 348
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gggaaagcttttcctttctcagaaaagatcaagactgtcccctgctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
