BAC Information

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BAC

Clone NameMSMg01-131L12
Chromosome3 (Build37)
Map Location 69,823,536 - 69,824,046
singlet/doubletsinglet
Overlap geneGm414
Upstream geneSmc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik
Downstream geneLOC100041384, LOC625868, LOC670542, EG625901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131L12.T7 (MSMg01no131_l12.b1)MSMg01-131L12.TJ (MSMg01no131_l12.g1)
ACCAG339146AG339147
length729731
length of high quality
(start - end)
248 (75 - 322)511 (70 - 580)
definitionCHROMAT_FILE: MSMg01no131_l12.b1 PHD_FILE: MSMg01no131_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:02 2005CHROMAT_FILE: MSMg01no131_l12.g1 PHD_FILE: MSMg01no131_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXCTAATTCGTACAGAGGGGCGG
AATTCTTTGTTTTTTCTTGAACCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGAAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGAGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGTCTCTTATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGCGCCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGATCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACGGTAACAACCAGTTGAGCCAGCACCTATTGTTGAAAAT
GCTGTCTTTCTTCCATTGGATGTGTTTAGCTCCCTTGTCGAAAATCAAGT
GACCATATGTGTGTGGGTTCATTTCTGGGTCTTCATTCCTATTCCATTGA
TCCTCTTGTCCTGTCTCTATACCCTACCTTTGCAGTTTTTATTACAATTG
CTCTGCAAGATAACTTTAAGGCTAGCATTTTGGATTCCTCCTATATCTCA
TTTACCCCTGTAGAAATATATTTGTTTTC
AATACAGTXXXXXXXXXXXXXXXXXXXXXXTTTCAATACAAGAGGTGACC
TATAGAAGGATTCCTGAAATTCACTTTGGTCCTCAGTGAAATATGGAAGC
CACACTGGCATTACCCACCCATCTTCTCCGTCGAACACTGTGGTTCCTAT
TTCAAAATCTCAGATGTCTTCAATACACACGTAATGAATATGCTCCCAGT
CTTACTGCAATGCATGCTGCCCTTTGTGTGCTATGCAGTATAGAGAACTT
AAGATAAAATCAAGATCAGAATGTCAAATTTAAATTCACTATTCCTTGAA
AAAACAATTCATGTAATGTGTGCTGTTTCTAGCCTGAAGACCAGAAAGCT
GTTAAATCAGTAATTATGCATCCCCATGGGGCTTTTGACTGATTTCCTTT
TGGGTAGGGGGTTTTAGAGACATGGGCTGCTTATGCTGACCTAGATTAAG
GGGTAAAGAGGATGCGATTAGACCCCACGGTTTCCTGACTGATGACACAC
TCTTGGAAATGGAATGAGGGCAAGGAAGTCATCATTATGAGAATGCTTCA
TGACTTATTTGGCTGGCAAGCTGCTTAAGGATGGAAGGTCCAAAGTCAGG
GTCAGCAAGACAAAGCAGGTCATGACTGTCTTGTAAGAAGAGTGTGAGGA
GATCTGTAGTATGAATGCTTTTGTTTCACCTGGCGGTGGATTGGACTGGG
CTATGCTTAGACTTCAGCCTCTCTTTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_l12.g1 MSMg01no131_l12.g1 CHROMAT_FILE:
MSMg01no131_l12.g1 PHD_FILE: MSMg01no131_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:02 2005
         (511 letters)



>mm_chr3_69823336_69824246
          Length = 911

 Score =  949 bits (491), Expect = 0.0
 Identities = 506/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcactttggtcctcagtgaaatatggaagccacactggcattacccacccatcttctcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 ttcactttggtcctcagtgaaatatggaagccacactggcattacccagccattttctcc 260

                                                                       
Query: 61  gtcgaacactgtggttcctatttcaaaatctcagatgtcttcaatacacacgtaatgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcgaacactgtggttcctatttcaaaatctcagatgtcttcaatacacacgtaatgaat 320

                                                                       
Query: 121 atgctcccagtcttactgcaatgcatgctgccctttgtgtgctatgcagtatagagaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctcccagtcttactgcaatgcatgctgccctttgtgtgctatgcagtatagagaact 380

                                                                       
Query: 181 taagataaaatcaagatcagaatgtcaaatttaaattcactattccttgaaaaaacaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagataaaatcaagatcagaatgtcaaatttaaattcactattccttgaaaaaacaatt 440

                                                                       
Query: 241 catgtaatgtgtgctgtttctagcctgaagaccagaaagctgttaaatcagtaattatgc 300
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgtaatgtgtgctgcatctagcctgaagaccagaaagctgttaaatcagtaattatgc 500

                                                                       
Query: 301 atccccatggggcttttgactgatttccttttgggtagggggttttagagacatgggctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccccatggggcttttgactgatttccttttgggtagggggttttagagacatgggctg 560

                                                                       
Query: 361 cttatgctgacctagattaaggggtaaagaggatgcgattagaccccacggtttcctgac 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 cttatgctgacctagattaaggggtaaagaggatccgattagaccccacggtttcctgac 620

                                                                       
Query: 421 tgatgacacactcttggaaatggaatgagggcaaggaagtcatcattatgagaatgcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgatgacacactcttggaaatggaatgagggcaaggaagtcatcattatgagaatgcttc 680

                                          
Query: 481 atgacttatttggctggcaagctgcttaagg 511
           |||||||||||||||||||||||||||||||
Sbjct: 681 atgacttatttggctggcaagctgcttaagg 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)