BAC Information

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BAC

Clone NameMSMg01-131L13
Chromosome3 (Build37)
Map Location 81,595,013 - 81,595,247
singlet/doubletsinglet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131L13.T7 (MSMg01no131_l13.b1)MSMg01-131L13.TJ (MSMg01no131_l13.g1)
ACCAG339148AG339149
length725720
length of high quality
(start - end)
235 (131 - 365)236 (77 - 312)
definitionCHROMAT_FILE: MSMg01no131_l13.b1 PHD_FILE: MSMg01no131_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:02 2005CHROMAT_FILE: MSMg01no131_l13.g1 PHD_FILE: MSMg01no131_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCG
GAATTCATATATATTCCATGTCTTGACTCTTATTTGATTTTGTCCTATGA
TTTGGATTTTTTTTTTTAACCCCACAAACTACCATGAGATTTAGAAATTC
TACCAGGAAACAGGCAGGCGAACCATGTCCATAGTCCAAAAGCTTAGGCG
GCTGAATCAGATTTGCTGCAGGTTTAGGGTCAGTCTGGGATGCACAGTAA
TTTGCAACCCACACTGGCCTCTTTAGAAATACATTGTATCAAATCAATAT
AACAGACAACAGGCAGAAAAACTAATACTAATCTGTTTTATGTTGGGATT
ACCTATATCATTTTCAAACCCGCATAACATTTTATAAAGTATAAATGTTG
GGATTACCTATATCATTTATCATTTTCAAACTTGTATAACATTTTATAAA
GTATAACAAATAACATTACTCTTTCATATTCTTTCTTAAAGACTAAGCGA
TGGCCTGAGTTTTAGACCTGGATATAACACCTTGTCATAAGAAAGGACAA
TTTTGTACTAATATTGACTTACAGAGATTTTTGAGATGCAAAAATTTTGA
ATTCATTTCATTTCTATTTCTGTGAAGGTATGCCCGTGCATCTGCACTCC
ACAGGTGTACAGGTCCCAGGGGAGGTCAATACAAGGAACTCGCACTTGTC
TGGAGCTGTTATTAATGACTTTTGA
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCTCCATCT
TTTTTTCTTTTTTTTAAATTGGGCATCTATTTCATTTACATTTCCAATGC
TATCCCAAAAGTCCCCAATATCACCCCCATTTCCCCACCCACCCACTCCC
ACTTCTTGGCCCTGTAGTTCCCCTGTACTGAGGCATATAAAGTTTGCACG
ACTAATGGGCCTCTCTTTCCACTGATGGCTGACTAGGCCATTTTCTGATT
CATATGCAGTTAGAGACACGAGCTCTTTTGGGTACTGGTTAGTTCATATT
GTTGTTCCACCTATAGGTTTGCCGATCCCTTTAGCTCCTTGGGTACTTTC
TCTAGCTCCTCCATTGGGAGCCCTGTGATTCATCCAATAGCTGACTGTGA
GCATCCACTTCTGTGTTTGCTAGGCCTCACCATAGTCTCACAAGTGACAG
CTCTATCTGGAGACTTTCAGCAAAATCTTGCTGATGAATGCAATGCTGTC
AGCGTTTGAAGGCTGATTATGAAAAGAATCCCCGGTAATGCCAATCTCTA
AAAAGATCTGAAGGCGATTTGGATTTCCTCAAGATTAGATTTTATGACTC
GATTTTCCTTTCCGATTTTTAAAACAAGAATCTTGTCCCTGCCCCCTCCT
TAAGAATCTGTTTAACCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_l13.b1 MSMg01no131_l13.b1 CHROMAT_FILE:
MSMg01no131_l13.b1 PHD_FILE: MSMg01no131_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:02 2005
         (235 letters)



>mm_chr3_81594813_81595447
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatgagatttagaaattctaccaggaaacaggcaggcgaaccatgtccatagtccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 accatgagatttagaaattctaccaggaaacaggcaggcgaaccatgtccatagtccaaa 376

                                                                       
Query: 61  agcttaggcggctgaatcagatttgctgcaggtttagggtcagtctgggatgcacagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 375 agcttaggcggctgaatcagatttgctgcaggtttagggtcagtctgggatgcacagtag 316

                                                                       
Query: 121 tttgcaacccacactggcctctttagaaatacattgtatcaaatcaatataacagacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttgcaacccacactggcctctttagaaatacattgtatcaaatcaatataacagacaac 256

                                                                  
Query: 181 aggcagaaaaactaatactaatctgttttatgttgggattacctatatcattttc 235
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aggcagaaaaacaaatactaatctgttttatgttgggattacctatatcattttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)