BAC Information

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BAC

Clone NameMSMg01-132A22
Chromosome3 (Build37)
Map Location 26,608,794 - 26,609,347
singlet/doubletsinglet
Overlap geneSpata16
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132A22.T7 (MSMg01no132_a22.b1)MSMg01-132A22.TJ (MSMg01no132_a22.g1)
ACCAG339398AG339399
length724720
length of high quality
(start - end)
251 (75 - 325)613 (67 - 679)
definitionCHROMAT_FILE: MSMg01no132_a22.b1 PHD_FILE: MSMg01no132_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:28 2005CHROMAT_FILE: MSMg01no132_a22.g1 PHD_FILE: MSMg01no132_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:28 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGTGGGCGGAATT
CAATAGATTGTTCCTATCACTACTGTGCATATGTGTGTGTACATTTGTGT
GTGTGTGTGTGTGTGTGTGTGTCTCGTGTGTGTGTGTGTGTGTGTGTGTA
AATGAAAGAAAAGGAGACCCCCAGTTTGAAAGTGTGAGTGAGGTAAGAGG
GCATAAATACATAGGTGTGGCTAGAATAAGGAAAGGGAAGAGAGACATGA
TGTAATTATATTCTAATTAAGGTATTTTTAAGATAAAATTTGGATTAATG
GAAGAAACATCTTTTTAACTTTGGATTTTTTATTAAACTTCGATTCTTGG
TGCTTTTCATTCATGATATGTCTGCCCCATGCTTTGGTGAGAAATTGTAC
GTAGCTTCACTTCCAGCTCCCCCCCACTTCCAAGCAAGTTTGAATGTCAC
TTCCTGTGCATCTCACTTCTAAGCAAGTTTGAATGTCACTTCCTGTGCAT
CTCACTTCCTAGCAAGCTTGTGATGTCACTTCCTGTGCATCTCACTTCCT
AGTAAGCTTGTGATGCCACTTCCTGTGCATCTCACATTCTAGCACAGCCA
CACTACACATTGCGCTGGTGAATTCCCCTTTACTACATTCCTCCACTGTA
TCCCTGGATTGACCTGCGCGCCAGCTGAGATAAAAGCCTCATCCAGCTGA
TCTACTCTCCACTAACATACTCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTAATTTAAAAAGTATAAAATGTGGGAAGATCA
AAAGCAGAAGTGTGCATTGAAAGCTCTACGTTCTACTAGGTGCAGGAGAC
CTGGGTGCAGAAAACTACACGAACCCTAAATATTCCCTGGAATGAACACT
GGACAGTAGAGCTTGGCAGTTCCCAGAACATGAGCTGTTCAAACAGCAGC
AACAGGGTCCTTTTGGATCTACTGTGGAACCTGAGAGACAGTCAGAGAGC
AGCACCCGAAACTGCTGATAACATAATGATGGGAGGGGGTGTGTGTGGTT
AGCTCTGTTATGTGTTTAACAACTGTGATGGCAGAATATCAAAATATTAT
CATGGATTCTCTAGCTTTAGGAGAAATGGAGAGAGATAGAGAGTGGGGAT
GGAGGAAAAGCAGGAAGGGAGAGAGAGGAGAAGAAAGGAGGAAGACAAAA
GAGGGGATTGACCAGTAAGCGACTCATGCTTCAGAATAGAAAGCTCAAGA
AGAAAAGAAATTCAGGAATTGCCTTAACACATAGTGCTTTTTCTACCCAG
TTTTAAGTTCCTTTATTAGAAAGGAATCTCTAATATAAAAGGAAAAGCTA
GGGCATTAGACCCGAGAAAGGTTCAGTCACAAAGGAGTGTCACCATTGTC
CACGCGGCGCTTCCCAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_a22.g1 MSMg01no132_a22.g1 CHROMAT_FILE:
MSMg01no132_a22.g1 PHD_FILE: MSMg01no132_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:28 2005
         (613 letters)



>mm_chr3_26608794_26609807
          Length = 1014

 Score = 1056 bits (546), Expect = 0.0
 Identities = 552/554 (99%), Gaps = 1/554 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaatttaaaaag-tataaaatgtgggaagatcaaaagcagaagtgtgcattgaaagct 59
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctaatttaaaaagttataaaatgtgggaagatcaaaagcagaagtgtgcattgaaagct 495

                                                                       
Query: 60  ctacgttctactaggtgcaggagacctgggtgcagaaaactacacgaaccctaaatattc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctacgttctactaggtgcaggagacctgggtgcagaaaactacacgaaccctaaatattc 435

                                                                       
Query: 120 cctggaatgaacactggacagtagagcttggcagttcccagaacatgagctgttcaaaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cctggaatgaacactggacagtagagcttggcagttcccagaacatgagctgttcaaaca 375

                                                                       
Query: 180 gcagcaacagggtccttttggatctactgtggaacctgagagacagtcagagagcagcac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gcagcaacagggtccttttggatctactgtggaacctgagagacagtcagagagcagcac 315

                                                                       
Query: 240 ccgaaactgctgataacataatgatgggagggggtgtgtgtggttagctctgttatgtgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ccgaaactgctgataacataatgatgggagggggtgtgtgtggttagctctgttatgtgt 255

                                                                       
Query: 300 ttaacaactgtgatggcagaatatcaaaatattatcatggattctctagctttaggagaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 254 ttaacaactgtgatggcagaatatcaaaatattatcatggattctctagttttaggagaa 195

                                                                       
Query: 360 atggagagagatagagagtggggatggaggaaaagcaggaagggagagagaggagaagaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 atggagagagatagagagtggggatggaggaaaagcaggaagggagagagaggagaagaa 135

                                                                       
Query: 420 aggaggaagacaaaagaggggattgaccagtaagcgactcatgcttcagaatagaaagct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aggaggaagacaaaagaggggattgaccagtaagcgactcatgcttcagaatagaaagct 75

                                                                       
Query: 480 caagaagaaaagaaattcaggaattgccttaacacatagtgctttttctacccagtttta 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  caagaagaaaagaaattcaggaattgccttaacacatagtgctttttctacccagtttta 15

                         
Query: 540 agttcctttattag 553
           ||||||||||||||
Sbjct: 14  agttcctttattag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space:   605412
Effective search space used:   605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)