BAC Information

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BAC

Clone NameMSMg01-132B13
Chromosome3 (Build37)
Map Location 144,891,029 - 144,891,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132B13.T7 (MSMg01no132_b13.b1)MSMg01-132B13.TJ (MSMg01no132_b13.g1)
ACCAG339426AG339427
length700704
length of high quality
(start - end)
612 (66 - 677)283 (71 - 353)
definitionCHROMAT_FILE: MSMg01no132_b13.b1 PHD_FILE: MSMg01no132_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:31 2005CHROMAT_FILE: MSMg01no132_b13.g1 PHD_FILE: MSMg01no132_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTATACGACTCCTATTCCAAGAGGAGCGCGGAATTCATA
TGATCTCTGCTCCGTTGATTTAGGGGGTGTTGTTTTCCTTGTGGCTCTTA
CACTTTCTGCCTCCTCTTCCCGGGGTTCACTGAGCTCTGAGGGGACAGAT
TTGGTGGAGACACACCATTGAGAGCTGTGTGTTCTATGTCCCCCTCACTT
TTGCTGTGAGTCTCTGTGTTTGTCCCCATCTGCTTGCTGTCAGAAGAAAC
TTCTCTGATGATGGCTGATAAGGCACTGGTATATGAATATAACAAAATAT
CACTGGGAGTCATTATTAGCACAGGTTTTCAAGAAAGGGGGGAGGTATTT
GGTTTTACCCTAACTCTCTAGACTATCTAATCTCTGGTTCTTGGTCCCCC
AGGTAGTGTTGGGTATGGGTTCTATCATGTGGAATGGCCCTTATGTCAAA
CCAAATGTTGGTTGGTTAATCCCACAAACTTTATGCCCTAGCATATTTTG
CAGGCATGACAGCACTGTAGATCATAGGATATACGACTGGGTTGGTGTTT
CCGTTTCTATTTTGGTAGCCCGCAGAGTATCTTTCTGCATCTAAGACACT
AGAATGTATGGATGAAGGTTTGATGTAGGCACTAGCTACATTTTCCACGT
TCCATGAATTGTGTGGGTGTTGTCTTCAGCAATGGCAGCCTGCTGCCATT

TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCCAGAAAAATTCTCAGTTGATTTTTTTACCTACCCATTGCAAT
CTCTCCTATCATTAGTCTCCTATATTGGTTGTAAACGAATTACAAACTGA
AAGATCCATATCAATACATAGTGATTAACATCTCATTATTTACTTACATT
GTCGTATAAATGATACTTGTTAATAAATAACAAATTTAAATTATTTGTTA
ATAAATACTCGTTAATAAATAGTGGATTTAAATTTATCAAGGATCATGCT
AATTAAATTAAAAAGTATATGAAATAAGTTCAATGTCTATTATGGTTTGG
ACACTTTATTGGCCCCCCCCCCCCCAAGTAAACTTACACATATGCGTATT
ACTGCTGTTGGCGTTACTTTATTTTTTTTATTAACAGAGTAAAATACCCA
ACAGAAACAGCTTAGGGGGAGGAAAGATGTATTTTATCTCACAGTGTCAT
GCTGTAGTGGATGACTGCTAGGCTTCTCTTTGTAGTAGAACCTTGCAGCA
GTTTATTGCATTTCTACCAACCAGGAAAACAGAGCAGTCCAGCCACTAAC
TAAGCAGTCCAGTCACTAGTGTGACCCACTAACTAAGCACTGCATCTCCT
AGGTACGTTTCTTGTCAAAAGGTCTACAGTTTCCCAAAAGAGGGACACCA
TCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_b13.g1 MSMg01no132_b13.g1 CHROMAT_FILE:
MSMg01no132_b13.g1 PHD_FILE: MSMg01no132_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:31 2005
         (283 letters)



>mm_chr3_144890963_144891645
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttgatttttttacctacccattgcaatctctcctatcattagtctcctatattggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cagttgatttttttacctacccattgcaatctctcctatcattagtctcctatattggtt 290

                                                                       
Query: 61  gtaaacgaattacaaactgaaagatccatatcaatacatagtgattaacatctcattatt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtaaacaaattacaaactgaaagatccatatcaatacatagtgattaacatctcattatt 230

                                                                       
Query: 121 tacttacattgtcgtataaatgatacttgttaataaataacaaatttaaattatttgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tacttacattgtcgtataaatgatacttgttaataaataacaaatttaaattatttgtta 170

                                                                       
Query: 181 ataaatactcgttaataaatagtggatttaaatttatcaaggatcatgctaattaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ataaatactcgttaataaatagtggatttaaatttatcaaggatcatgctaattaaatta 110

                                                      
Query: 241 aaaagtatatgaaataagttcaatgtctattatggtttggaca 283
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 109 aaaagtaaatgaaataagttcaatgtctattatggtttggaca 67


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)