XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCCT
TCGCTTTTTCAAGAAAAGCAAAATCCATCATTTCCCTTTCTCTTTTCTCT
AACCTCCGTTAGATCTTTCCCCCTTAAAGCCGGGTTCTCCAGTCTTCCAG
ATTATTCTCACAGAAGAAGGAAGGGTTTCTGTATGGCCAGAGGGTTGTCC
TCTTCGCGTTGCCCGAGTCTACCACTGGACCTCGGGCACTTCTACACCGA
TGGTATTTTCAATCAAGATCTCTGATTGGGAATAAGCCACAGGATCTGTA
TACCTCCTTGCCTTCCCGAGTGTTGACATTATTCTACACTAGAATAGACT
AAAAATATGTATGCAGTGATCTGTGCTTCTGCATTTTTAGAATTCTTATT
TTCTATTATTAATTCTGTAATTTACTTTTCTACTGCTGGCAATTAAGTGG
AAATAGCTAGCTCACCAAGGCAGTGAATCATCGACTCTCCTAACAGTAAG
CCAACCGCAGATTGGCTGTCTTTCTCCGAAACATGTTTTTTTCTTTCTTT
TTTTAAATATTAAATTTCCCTAAAAATATAAATCATACAAACTGACAGTA
ATGAGATACTCATTCAGCCAGTTGTCTGACTGTAAAGAAGTTGTTGTATC
TAAGCACTTTAATTAACAAACTAGGTCACTGAATAATTTCAGATGANCAA
TGGTATATTACATTA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGCTTTTTTCCCCGCGTGGGACAAATG
TAGGAATGGCTGGAGGATGGCTTCCTTTAGCAGCCTTCCATAGAAGTTCA
CCTGCTGACATGCTGTTGAGGCTCTGCCCCCAGCACTCCGTGAGCACAGG
GTTGGATTGTGCTAGCTTGGGTAAAGTAGACTACTGTGGTGCAACATTAT
AGGGTGGAAGAAAATAACCGCCTATCCTTACAGTCCAGCTGGGGCTGGAC
TGACTCCTTTGTACTTTTGGAAACCCTTGTCAAGCCAAACTACTTAGCTG
GTGCAGGATGACAGGATCCTGGCGGGAAGGCATCTCTTGAGTCACTGGCA
ACTTCTTTCCATGTGAATCTTATCAGGGCTTCGTCTCCTTCTTGTATTTA
TAAACACATAAGAGACTTCAATGATGGCGAGTCACCCAGGCTTCAGCTCT
CCTGAGTCCTAAACTGCTCTGTGTAACAATTGCGTCCAGTTTACTACTCT
ACTGCACTATGGCATTGGATAATTTTTCAATCCTAAAAATCTTTGAAAGA
CAGGAAACTACTTTCTATTCCTTTACTTTTATATCTATTAATTCTATCCC
TTTGGATGCTCATCAGTTGAGACGGCTGCCAAGTCTCTTGTGTT

Query= MSMg01no132_b22.b1 MSMg01no132_b22.b1 CHROMAT_FILE:
MSMg01no132_b22.b1 PHD_FILE: MSMg01no132_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:32 2005
         (319 letters)



>mm_chr3_126863545_126864263
          Length = 719

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttctgcatttttagaattcttattttctattattaattctgtaatttacttttctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgcttctgcatttttagaattcttattttctattattaattctgtaatttacttttctac 460

                                                                       
Query: 61  tgctggcaattaagtggaaatagctagctcaccaaggcagtgaatcatcgactctcctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgctggcaattaagtggaaatagctagctcaccaaggcagtgaatcatcgactctcctaa 400

                                                                       
Query: 121 cagtaagccaaccgcagattggctgtctttctccgaaacatgtttttttctttctttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cagtaagccaaccgcagattggctgtctttctccgaaacatgtttttttctttctttttt 340

                                                                       
Query: 181 taaatattaaatttccctaaaaatataaatcatacaaactgacagtaatgagatactcat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 339 taaatattaaatttccctaaaaatataaatcttacaaactgacagtaatgagatactcat 280

                                                                       
Query: 241 tcagccagttgtctgactgtaaagaagttgttgtatctaagcactttaattaacaaacta 300
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 279 tcagccagttgtctggctgtaaagaagttgttgtatctaaacactttaattaacaaacta 220

                              
Query: 301 ggtcactgaataatttcag 319
           |||||||||||||||||||
Sbjct: 219 ggtcactgaataatttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_b22.g1 MSMg01no132_b22.g1 CHROMAT_FILE:
MSMg01no132_b22.g1 PHD_FILE: MSMg01no132_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:32 2005
         (624 letters)



>mm_chr3_126717239_126718262
          Length = 1024

 Score = 1183 bits (612), Expect = 0.0
 Identities = 621/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggcttttttccccgcgtgggacaaatgtaggaatggctggaggatggcttcctttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggcttttttccccgcgtgggacaaatgtaggaatggctggaggatggcttcctttag 260

                                                                       
Query: 61  cagccttccatagaagttcacctgctgacatgctgttgaggctctgcccccagcactccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccttccatagaagttcacctgctgacatgctgttgaggctctgcccccagcactccg 320

                                                                       
Query: 121 tgagcacagggttggattgtgctagcttgggtaaagtagactactgtggtgcaacattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcacagggttggattgtgctagcttgggtaaagtagactactgtggtgcaacattat 380

                                                                       
Query: 181 agggtggaagaaaataaccgcctatccttacagtccagctggggctggactgactccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggtggaagaaaataaccgcctatccttacagtccagctggggctggactgactccttt 440

                                                                       
Query: 241 gtacttttggaaacccttgtcaagccaaactacttagctggtgcaggatgacaggatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtacttttggaaacccttgtcaagccaaactacttagctggtgcaggatgacaggatcct 500

                                                                       
Query: 301 ggcgggaaggcatctcttgagtcactggcaacttctttccatgtgaatcttatcagggct 360
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 501 ggcgggaaggcatctcttgagtcactggccacttctttccctgtgaatcttatcagggct 560

                                                                       
Query: 361 tcgtctccttcttgtatttataaacacataagagacttcaatgatggcgagtcacccagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcgtctccttcttgtatttataaacacataagagacttcaatgatggcgagtcacccagg 620

                                                                       
Query: 421 cttcagctctcctgagtcctaaactgctctgtgtaacaattgcgtccagtttactactct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcagctctcctgagtcctaaactgctctgtgtaacaattgcgtccagtttactactct 680

                                                                       
Query: 481 actgcactatggcattggataatttttcaatcctaaaaatctttgaaagacaggaaacta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgcactatggcattggataatttttcaatcctaaaaatctttgaaagacaggaaacta 740

                                                                       
Query: 541 ctttctattcctttacttttatatctattaattctatccctttggatgctcatcagttga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttctattcctttacttttatatctattaattctatccctttggatgctcatcagttga 800

                                   
Query: 601 gacggctgccaagtctcttgtgtt 624
           || |||||||||||||||||||||
Sbjct: 801 gatggctgccaagtctcttgtgtt 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)