Query= MSMg01no132_d21.b1 MSMg01no132_d21.b1 CHROMAT_FILE:
MSMg01no132_d21.b1 PHD_FILE: MSMg01no132_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:42 2005
(562 letters)
>mm_chr3_39147974_39148936
Length = 963
Score = 1042 bits (539), Expect = 0.0
Identities = 557/563 (98%), Gaps = 1/563 (0%)
Strand = Plus / Minus
Query: 1 catctggaaatacttcgaatacactaatctctgtaaggaacacagttactgtgagggggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 catctggaaatacttcgaatacactaatctctgtaaggaacacagttactgtgagggggg 704
Query: 61 tgaacccatgagaacctacctatgggaagtccttggaagcactagtgtaatttgtgatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgaacccatgagaacctacctatgggaagtccttggaagcactagtgtaatttgtgatgg 644
Query: 121 ttagccaggtccgccttcagtagcagcagccattatagtcttgtcatatttatgagacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gcagccaggtccgccttcagtagcagcagccattatagtcttgtcatatttatgagacag 584
Query: 181 tgcagatataaacaggataggcagtggtcaaatgtggcccctctgtctttcttctttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgcagatataaacaggataggcagtggtcaaatgtggcccctctgtctttcttctttctg 524
Query: 241 gaacggtggctaatacctgagccagtgaccatgggaatgtgtaacaccctgtgccagcag 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaacggtggctaaaacctgagccagtgaccatgggaatgtgtaacaccctgtgccagcag 464
Query: 301 tagtggccagacaatcattaaagtggctataaacaagacaggattaaccatgggaaaggg 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 463 tagtggccagacaatcattaaagtggctataaacaagacaggattaagcatgggaaaggg 404
Query: 361 ctgtggggccctcctactagaaagtctggcgggaagccagagtcccttgacatgcaatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgtggggccctcctactagaaagtctggcgggaagccagagtcccttgacatgcaatct 344
Query: 421 tgttgtgaagttcacctcagcaactgtgcctgctaatga-ggggaagcccattgcctatg 479
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 343 tgttctgaagttcacctcagcaactgtgcctgctaatgagggggaagcccattgcctatg 284
Query: 480 tgggtgggagatatggtagagaaggcacaaaaggccagtcccaccactaattaaagagca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgggtgggagatatggtagagaaggcacaaaaggccagtcccaccactaattaaagagca 224
Query: 540 tgcatgcatatacttaccctctt 562
|||||||||||||||||||||||
Sbjct: 223 tgcatgcatatacttaccctctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space: 526056
Effective search space used: 526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_d21.g1 MSMg01no132_d21.g1 CHROMAT_FILE:
MSMg01no132_d21.g1 PHD_FILE: MSMg01no132_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:42 2005
(294 letters)
>mm_chr3_38984075_38984771
Length = 697
Score = 532 bits (275), Expect = e-155
Identities = 289/295 (97%), Gaps = 3/295 (1%)
Strand = Plus / Plus
Query: 1 aattaaaggaaggttattagtaatctatgttaattgattacaagctaaaccaccacaata 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 201 aattaaaggaaggttattagtaatctatgttaattgattacaagctaaacaagcacaata 260
Query: 61 tggaccccaggaattactcaagaccaaggcatatttttttctcatatgatatcaacagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaccccaggaattactcaagaccaaggcatatttttttctcatatgatatcaacagct 320
Query: 121 gccaagcagttatgtgggtctctatatggtgactacctggcccaagacagcccctccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaagcagttatgtgggtctctatatggtgactacctggcccaagacagcccctccagt 380
Query: 181 catagcttctttatgtccaaaagcaa---gggggggcattaggagtgagacttttcattg 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 catagcttctttatgtccaaaagcaaagggggggggcattaggagtgagacttttcattg 440
Query: 238 aaagcaaggcctagacttggaactcacatattttcaaactcacactttttacttc 292
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagcaaggcctagacatggaactcacatattttcaaactcacactttttacttc 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 697
Length adjustment: 9
Effective length of query: 285
Effective length of database: 688
Effective search space: 196080
Effective search space used: 196080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
