Query= MSMg01no132_n14.b1 MSMg01no132_n14.b1 CHROMAT_FILE:
MSMg01no132_n14.b1 PHD_FILE: MSMg01no132_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:29 2005
(644 letters)
>mm_chr3_82697559_82698601
Length = 1043
Score = 781 bits (404), Expect = 0.0
Identities = 470/492 (95%), Gaps = 5/492 (1%)
Strand = Plus / Minus
Query: 155 gactcatttgttattcattggatgctcattctgtgctaagcacttaagtactgaaacatc 214
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 1043 gactcatttgtcattcattggatgctcattctgtgctaagcacttaagtactgcaacgtc 984
Query: 215 atgttctggtattattttacac-tttttgaagacaggttctcactcaataggtgagattt 273
|||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct: 983 atgttctggtattattttacacttttttg-agacaggttctcactcaatgggtgagattt 925
Query: 274 gcctagaaggaattccctaagagag-tcgtgtgcctctgcttcccaagtgctgggattaa 332
||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||
Sbjct: 924 gcctagaaggaattccctaagagagct-gtgtgcctcagcttcccaagtgctggggttaa 866
Query: 333 aggtatgctcacctctccaggcctaatattacctttatccagctataacagcatgcattc 392
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 865 aggtatgctcaccactccaggcctaatattacttttatccagctataacagcatgcattc 806
Query: 393 actgtggtgggaaatacagacagaagagcaagcaattctgcctcaggagtcaggcacttt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 actgtggtgggaaatacagacagaagagcaagcaattctgcctcaggagtcaggcacttt 746
Query: 453 acttgaaggaggcaataataaccaggaagctgacccactgaggtaattttgtaacactga 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acttgaaggaggcaataataaccaggaagctgacccactgaggtaattttgtaacactga 686
Query: 513 catcattctactctccttgggaagggaggaaaagaaggaagggtctatttggtaaatgtt 572
||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 685 catcattctactctctttgggaagagaggaaaagaaggaaggatctatttggcaaatgtt 626
Query: 573 acacaacaccagaatcattgaacttttagataagagaatctcttttgttttggttttttt 632
||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct: 625 acacaacaccagaatcattgaacttgtagataagagaatctctttcgttttttttttttt 566
Query: 633 tccccatttgat 644
| || |||||||
Sbjct: 565 ttcc-atttgat 555
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space: 654922
Effective search space used: 654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_n14.g1 MSMg01no132_n14.g1 CHROMAT_FILE:
MSMg01no132_n14.g1 PHD_FILE: MSMg01no132_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:29 2005
(386 letters)
>mm_chr3_82593181_82593966
Length = 786
Score = 719 bits (372), Expect = 0.0
Identities = 385/392 (98%), Gaps = 6/392 (1%)
Strand = Plus / Plus
Query: 1 acatgcaaaactcagaacggctcttcccagaccaaagaaatccatcttgtatttattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 acatgcaaaactcagaacggctcttcccagaccaaagaaatccatcttgtatttattttg 254
Query: 61 ttttgtgtgcatgcatatgtatgtgtgtgtatgtatatgtgtatatatgtatatatgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttttgtgtgcatgcatatgtatgtgtgtgtatgtatatgtgtatatatgtatatatgtgt 314
Query: 121 gtgtacatgtgtgtatacatatgtgtgt--acatgtgtgtgtgtgtgtgtgt----acat 174
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 315 gtgtacatgtgtgtatacatatgtgtgtgtacatgtgtgtgtgtgtgtgtgtgtgtacat 374
Query: 175 gtgtgtgtgagtatgtatgtgtgtatatgcataaaccattaaactgaaagtctggctgaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtgtgtgtgagtatgtatgtgtgtatatgcataaaccattaaactgaaagtctggctgaa 434
Query: 235 aaggggagtgtttcattttaaaactgtaaggccagatacacgaataactacttctccaaa 294
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaggggagtgtttcaatttaaaactgtaaggccagatacacgaataactacttctccaaa 494
Query: 295 aactttaacttgtttgatttcattttgttttatcatttaactgaaacagagctctgttcc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aactttaacttgtttgatttcattttgttttatcatttaactgaaacagagctctgttcc 554
Query: 355 agtcctgtggactatcagccatccttgcagga 386
||||||||||||||||||||||||||||||||
Sbjct: 555 agtcctgtggactatcagccatccttgcagga 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
