Query= MSMg01no132_n15.b1 MSMg01no132_n15.b1 CHROMAT_FILE:
MSMg01no132_n15.b1 PHD_FILE: MSMg01no132_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:29 2005
(541 letters)
>mm_chr3_8928312_8929252
Length = 941
Score = 764 bits (395), Expect = 0.0
Identities = 465/511 (90%), Gaps = 39/511 (7%)
Strand = Plus / Minus
Query: 1 gtgaataaaagaactcatcaccagca-tgcggatttcagccactacacacagttcttgga 59
||||||||||||||| |||||||||| | |||||||||||||||||||||| ||||||||
Sbjct: 474 gtgaataaaagaacttatcaccagcact-cggatttcagccactacacacaattcttgga 416
Query: 60 atacagaaaagtttaatttgaactccttctggatcttttaattaagttacacactgtttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atacagaaaagtttaatttgaactccttctggatcttttaattaagttacacactgtttt 356
Query: 120 ctgtgaagtgtttgaaagcaataaaaactataatttgggtaggggttcttttttatgtat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctgtgaagtgtttgaaagcaataaaaactataatttgggtaggggttcttttttatgtat 296
Query: 180 ttcccctttcaggaaagggggagtcatttttgcaacttctctcagactcttcagatgctg 239
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttcccctttcaggaaagggtgagtcatttttgcaacttctctcagactcttcagatgctg 236
Query: 240 acatgtaatacagcaaagtaaagctacaaactcagccatccatccatccatccatccatc 299
|||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct: 235 acatgtaaaacagcaaagtaaagctacaaactcagccaccca-cc--------------- 192
Query: 300 catccatccatccatccatccatccatccatccatccatccagccgaccggcagttgcaa 359
||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 --------------------catccatccatccatccatccagccgaccggcagttgcaa 152
Query: 360 aggtagaggcgagagtgtgcgaggggacacagcaaccgtgcaaacgtcaggatcctgcat 419
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aggtagaagcgagagtgtgcgaggggacacagcaaccgtgcaaacgtcaggatcctgcat 92
Query: 420 tcttttgattgtttccttt-aaattaaggtttatttgattatgtgtttgtatgcaagtgt 478
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tctttagattgtttccttttaaattaaggtttatttgattatgtgtttgtatgcaagtgt 32
Query: 479 gttatgtgcttatgagtataggcgcctgtgg 509
|||||||||||||||||||||||||||||||
Sbjct: 31 gttatgtgcttatgagtataggcgcctgtgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_n15.g1 MSMg01no132_n15.g1 CHROMAT_FILE:
MSMg01no132_n15.g1 PHD_FILE: MSMg01no132_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:29 2005
(284 letters)
>mm_chr3_8772558_8773241
Length = 684
Score = 487 bits (252), Expect = e-142
Identities = 276/284 (97%)
Strand = Plus / Plus
Query: 1 cccacttggacttccactttgtggacacgaaaggccaaaccacattcttaactgtgcctg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cccacttggacttccactttgtggagacgaaaggccaaaccacattcttaactgtgcctg 260
Query: 61 gactgaacaaccaggcctcccaagagggagttgtctctcgaggacaaggaatgcaatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgaacaaccaggcctcccaagagggagttgtctctcgaggacaaggaatgcaatatg 320
Query: 121 cacagctgaccctttctgacccctcaaggactagtctgtgccaagagaaagggcttccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 cacagctgaccctttctgacccctcaaggactagtctgtgccaagagaaagggtttccaa 380
Query: 181 gtcccttgacctgtaaatacctaattaggaaagtttcaaagctgacaccatataaaactc 240
|||||| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gtccctggacccgtaactacctaattaggaaactttcaaagctgacaccatataaaactc 440
Query: 241 actcattatttctaaaaggaggagtgcggaggaaaaacttatca 284
|||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 441 actcattatttctaaaaggaggaggggggaggaaaaacttatca 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
