Query= MSMg01no132_p10.b1 MSMg01no132_p10.b1 CHROMAT_FILE:
MSMg01no132_p10.b1 PHD_FILE: MSMg01no132_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:38 2005
(665 letters)
>mm_chr4_75594407_75595474
Length = 1068
Score = 1239 bits (641), Expect = 0.0
Identities = 656/663 (98%), Gaps = 5/663 (0%)
Strand = Plus / Minus
Query: 7 gaatatatcgaattcctttttaacaactgctcactggtttaaagccttacttagcatttt 66
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaatatatcgaagtcctttttaacaactgctcactggtttaaagccttacttagcatttt 630
Query: 67 tccttagattcatgagaaatcgccgtttgtaaaagcatgcgctatttatatatgcctgtc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tccttagattcatgagaaatcgccgtttgtaaaagcatgcgctatttatatatgcctgtc 570
Query: 127 agctacatcacagagtaaatgaatccatctattttcaacggcctgtgcccaagccttata 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agctacatcccagagtaaatgaatccatctattttcaacggcctgtgcccaagccttata 510
Query: 187 cacaacatttaaataggttaataaatgtaggaacttttttttttcagattattcaatgtg 246
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 509 cacaacatttaaataggttaataaatgtaggaac-tttttttttcagattattcaatgtg 451
Query: 247 cttggtacccaa----cccccccaaaaaagctatcaactagttttcttccttgcaattat 302
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cttggtacccaacccccccccccaaaaaagctatcaactagttttcttccttgcaattat 391
Query: 303 gaagatcctggaattatcttaagctacaaaagaaagagaaagatattcaaaaccttcctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaagatcctggaattatcttaagctacaaaagaaagagaaagatattcaaaaccttcctg 331
Query: 363 aaatggtagaatgagagttgggatattttagcagccgctcacctggaaataagcaattca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaatggtagaatgagagttgggatattttagcagccgctcacctggaaataagcaattca 271
Query: 423 gtgtagagctcactggctcagagctgtactgtcacagggccttttgagaatctgttgaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtgtagagctcactggctcagagctgtactgtcacagggccttttgagaatctgttgaaa 211
Query: 483 gttatatgttcatagcagccttgtttataatagccagaagctggaaagaacccagatgcc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gttatatgttcatagcagccttgtttataatagccagaagctggaaagaacccagatgcc 151
Query: 543 cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggaatactactcag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggaatactactcag 91
Query: 603 ctattaaaaaatgaatttatgaaattcctaggcaaatggatgaacctggagggtatcatc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 ctattaaaaaatgaatttatgaaattcctaggcaaatggatgaacctggagggtatcatc 31
Query: 663 ctg 665
|||
Sbjct: 30 ctg 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1068
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1058
Effective search space: 692990
Effective search space used: 692990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_p10.g1 MSMg01no132_p10.g1 CHROMAT_FILE:
MSMg01no132_p10.g1 PHD_FILE: MSMg01no132_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:38 2005
(620 letters)
>mm_chr3_90564414_90565436
Length = 1023
Score = 580 bits (300), Expect = e-169
Identities = 383/414 (92%), Gaps = 12/414 (2%)
Strand = Plus / Minus
Query: 211 ttttgttttgttttaaattacaaaaggaaatttatttcaaaagcataagggagcattta- 269
|||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tttt-tttt-tttt---ttacaaaaggaaatttatttcaaaagcataagggagcatttac 780
Query: 270 ---tatttaaacaaggggagaac-caggcatccttgcagaagaaaaaggttcatggcatg 325
||||||||||| ||||| || |||| ||||| |||||||||||| |||||||||||
Sbjct: 779 atttatttaaacaacgggag-acacaggtgtcctttcagaagaaaaagattcatggcatg 721
Query: 326 aagagtttctttcatatttctgaagcaaaaagaacactgagttatgaactactgactagg 385
|||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 720 aagattttctttcaaatttctgaagcaaaaagaacactaatttatgaactactgactagg 661
Query: 386 caagggaaaggaagcaaaaggatgagcaggggatgaatgcagtgagctctgcagtagaca 445
|| ||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 660 cagggggaaggaagcaaaaggatgaggaggggatggatgcagtgagctctgcagtagaca 601
Query: 446 tgaggtcaagttacttctgccaagtttacaaatgccctcaggcaagagaggaaaagttac 505
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgaggtcaagttacttctgcggagtttacaaatgccctcaggcaagagaggaaaagttac 541
Query: 506 tgtgttcaaatttatgttgctatagtctaattcatttttgtacttgaaatggctttagac 565
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 540 tgtgttcaaatttatgttgctatagtccaattcatttttgtacttgaaatggctttaggc 481
Query: 566 cctggctgatttatctctgaggtccataactagatggtcccagtattcaactgg 619
| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 catg-ctgatctatctctgaggtccataactagatggtcccagtattcaactgg 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1023
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1013
Effective search space: 617930
Effective search space used: 617930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|