BAC Information

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BAC

Clone NameMSMg01-132P10
Chromosome4 (Build37)3 (Build37)
Map Location 75,594,434 - 75,595,09590,564,841 - 90,565,247
singlet/doubletsingletsinglet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132P10.T7 (MSMg01no132_p10.b1)MSMg01-132P10.TJ (MSMg01no132_p10.g1)
ACCAG340064AG340065
length702693
length of high quality
(start - end)
665 (38 - 702)620 (70 - 689)
definitionCHROMAT_FILE: MSMg01no132_p10.b1 PHD_FILE: MSMg01no132_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:38 2005CHROMAT_FILE: MSMg01no132_p10.g1 PHD_FILE: MSMg01no132_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:38 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(75,594,434 - 75,595,095)(90,564,841 - 90,565,247)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCTATTCGAAGAGATCCGCGGAATATA
TCGAATTCCTTTTTAACAACTGCTCACTGGTTTAAAGCCTTACTTAGCAT
TTTTCCTTAGATTCATGAGAAATCGCCGTTTGTAAAAGCATGCGCTATTT
ATATATGCCTGTCAGCTACATCACAGAGTAAATGAATCCATCTATTTTCA
ACGGCCTGTGCCCAAGCCTTATACACAACATTTAAATAGGTTAATAAATG
TAGGAACTTTTTTTTTTCAGATTATTCAATGTGCTTGGTACCCAACCCCC
CCAAAAAAGCTATCAACTAGTTTTCTTCCTTGCAATTATGAAGATCCTGG
AATTATCTTAAGCTACAAAAGAAAGAGAAAGATATTCAAAACCTTCCTGA
AATGGTAGAATGAGAGTTGGGATATTTTAGCAGCCGCTCACCTGGAAATA
AGCAATTCAGTGTAGAGCTCACTGGCTCAGAGCTGTACTGTCACAGGGCC
TTTTGAGAATCTGTTGAAAGTTATATGTTCATAGCAGCCTTGTTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAA
TGAATTTATGAAATTCCTAGGCAAATGGATGAACCTGGAGGGTATCATCC
TG
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGCACAAACCCATCTGGTCCTGGGTTTTGTT
GTTGTTCTTGTTGTTGTTGGGAGACTATTAATGACTATTTCTATTTCTTT
AGGGGATATGGGTCTGTTTAGATCATTCATCTGATCCTAATTTAACTTTG
GTACCTGGTATCTGTCTAGAAAATTGTCCATTTCATCCAGGTTTTCCTGT
TTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAAATTAC
AAAAGGAAATTTATTTCAAAAGCATAAGGGAGCATTTATATTTAAACAAG
GGGAGAACCAGGCATCCTTGCAGAAGAAAAAGGTTCATGGCATGAAGAGT
TTCTTTCATATTTCTGAAGCAAAAAGAACACTGAGTTATGAACTACTGAC
TAGGCAAGGGAAAGGAAGCAAAAGGATGAGCAGGGGATGAATGCAGTGAG
CTCTGCAGTAGACATGAGGTCAAGTTACTTCTGCCAAGTTTACAAATGCC
CTCAGGCAAGAGAGGAAAAGTTACTGTGTTCAAATTTATGTTGCTATAGT
CTAATTCATTTTTGTACTTGAAATGGCTTTAGACCCTGGCTGATTTATCT
CTGAGGTCCATAACTAGATGGTCCCAGTATTCAACTGGGCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_p10.b1 MSMg01no132_p10.b1 CHROMAT_FILE:
MSMg01no132_p10.b1 PHD_FILE: MSMg01no132_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:38 2005
         (665 letters)



>mm_chr4_75594407_75595474
          Length = 1068

 Score = 1239 bits (641), Expect = 0.0
 Identities = 656/663 (98%), Gaps = 5/663 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaatatatcgaattcctttttaacaactgctcactggtttaaagccttacttagcatttt 66
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaatatatcgaagtcctttttaacaactgctcactggtttaaagccttacttagcatttt 630

                                                                       
Query: 67  tccttagattcatgagaaatcgccgtttgtaaaagcatgcgctatttatatatgcctgtc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tccttagattcatgagaaatcgccgtttgtaaaagcatgcgctatttatatatgcctgtc 570

                                                                       
Query: 127 agctacatcacagagtaaatgaatccatctattttcaacggcctgtgcccaagccttata 186
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agctacatcccagagtaaatgaatccatctattttcaacggcctgtgcccaagccttata 510

                                                                       
Query: 187 cacaacatttaaataggttaataaatgtaggaacttttttttttcagattattcaatgtg 246
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 509 cacaacatttaaataggttaataaatgtaggaac-tttttttttcagattattcaatgtg 451

                                                                       
Query: 247 cttggtacccaa----cccccccaaaaaagctatcaactagttttcttccttgcaattat 302
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cttggtacccaacccccccccccaaaaaagctatcaactagttttcttccttgcaattat 391

                                                                       
Query: 303 gaagatcctggaattatcttaagctacaaaagaaagagaaagatattcaaaaccttcctg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaagatcctggaattatcttaagctacaaaagaaagagaaagatattcaaaaccttcctg 331

                                                                       
Query: 363 aaatggtagaatgagagttgggatattttagcagccgctcacctggaaataagcaattca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaatggtagaatgagagttgggatattttagcagccgctcacctggaaataagcaattca 271

                                                                       
Query: 423 gtgtagagctcactggctcagagctgtactgtcacagggccttttgagaatctgttgaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtgtagagctcactggctcagagctgtactgtcacagggccttttgagaatctgttgaaa 211

                                                                       
Query: 483 gttatatgttcatagcagccttgtttataatagccagaagctggaaagaacccagatgcc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gttatatgttcatagcagccttgtttataatagccagaagctggaaagaacccagatgcc 151

                                                                       
Query: 543 cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggaatactactcag 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggaatactactcag 91

                                                                       
Query: 603 ctattaaaaaatgaatttatgaaattcctaggcaaatggatgaacctggagggtatcatc 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  ctattaaaaaatgaatttatgaaattcctaggcaaatggatgaacctggagggtatcatc 31

              
Query: 663 ctg 665
           |||
Sbjct: 30  ctg 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1068
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1058
Effective search space:   692990
Effective search space used:   692990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no132_p10.g1 MSMg01no132_p10.g1 CHROMAT_FILE:
MSMg01no132_p10.g1 PHD_FILE: MSMg01no132_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:38 2005
         (620 letters)



>mm_chr3_90564414_90565436
          Length = 1023

 Score =  580 bits (300), Expect = e-169
 Identities = 383/414 (92%), Gaps = 12/414 (2%)
 Strand = Plus / Minus

                                                                       
Query: 211 ttttgttttgttttaaattacaaaaggaaatttatttcaaaagcataagggagcattta- 269
           |||| |||| ||||   |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 834 tttt-tttt-tttt---ttacaaaaggaaatttatttcaaaagcataagggagcatttac 780

                                                                       
Query: 270 ---tatttaaacaaggggagaac-caggcatccttgcagaagaaaaaggttcatggcatg 325
              ||||||||||| ||||| || ||||  ||||| |||||||||||| |||||||||||
Sbjct: 779 atttatttaaacaacgggag-acacaggtgtcctttcagaagaaaaagattcatggcatg 721

                                                                       
Query: 326 aagagtttctttcatatttctgaagcaaaaagaacactgagttatgaactactgactagg 385
           |||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 720 aagattttctttcaaatttctgaagcaaaaagaacactaatttatgaactactgactagg 661

                                                                       
Query: 386 caagggaaaggaagcaaaaggatgagcaggggatgaatgcagtgagctctgcagtagaca 445
           || ||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 660 cagggggaaggaagcaaaaggatgaggaggggatggatgcagtgagctctgcagtagaca 601

                                                                       
Query: 446 tgaggtcaagttacttctgccaagtttacaaatgccctcaggcaagagaggaaaagttac 505
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgaggtcaagttacttctgcggagtttacaaatgccctcaggcaagagaggaaaagttac 541

                                                                       
Query: 506 tgtgttcaaatttatgttgctatagtctaattcatttttgtacttgaaatggctttagac 565
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 540 tgtgttcaaatttatgttgctatagtccaattcatttttgtacttgaaatggctttaggc 481

                                                                 
Query: 566 cctggctgatttatctctgaggtccataactagatggtcccagtattcaactgg 619
           | || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 catg-ctgatctatctctgaggtccataactagatggtcccagtattcaactgg 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1023
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1013
Effective search space:   617930
Effective search space used:   617930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)