BAC Information

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BAC

Clone NameMSMg01-133A16
Chromosome3 (Build37)
Map Location 40,902,353 - 40,902,591
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133A16.T7 (MSMg01no133_a16.b1)MSMg01-133A16.TJ (MSMg01no133_a16.g1)
ACCAG340123AG340124
length687702
length of high quality
(start - end)
239 (119 - 357)240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no133_a16.b1 PHD_FILE: MSMg01no133_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:44 2005CHROMAT_FILE: MSMg01no133_a16.g1 PHD_FILE: MSMg01no133_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGATCCGCGGAATC
ACTTCCTTCCCCCAAGCTGGGCAGTTCATAACCACCTGTAACTCCAGCTC
CAGGGGACCCATTTCCCTCCTCTGGCTTCTGAGGACCCCTGCAAACACAT
GCATATAGTCACAACTACACACACACATAATTTAAAATAAAACATTTTTA
AAAAGATGTTGAAGTAAGATGCCTAGGGAAGATGCCAGAATTAAAACATT
CATGAGTCTCATGCCCAAGCTAATATTATTTATCCCACCATTTTTATATA
ATTAGTATTACTATAATTATCCTGGTTTACAACCTAATAGATAGTTAGAT
GAATTGTTCTATGTGCAGGCTTTGCTTTCTGCTCAATAGCTCTGAGTTAA
ATTAGAGAAATAACAGTTAATGTGGCCACTGAGGAAAATGTAAAATATCT
TACTGAATTGTTAAATGAGCTAAGAAATCTCTTATGCTCAATATTTCTGT
TTGGTGAAGTTGGATCCTAAACAAGTCTGAGTCCTAAAGCGTATCTGAGG
TGGGGGAGAAGCTCCAGAGAAGTGTTCTGTCAAGTAAAAAATGGCCACCA
ACTGTTTACAATTCTCATTTGATTATCTTTCTATAGGAAAACAATAAAAA
TGGTTATGAAGAATTGAAATAAAACTGTTGTTGCGTG
AATGAAGTGGGAGGCCTGGAGGCCGCCGGTTCGTACTCTGTAGGNGAACT
ATAGAATGACTNGAGCAAGTCCAGAAATGGAGAGACTTTGCCTGACTTAA
TCCCAGCCCTTTGGACCCAAAGGCTGGCAGATCTCTGTGACTTCAGGCTA
TTGTGAGCTACAGGGCAAGTTCTAGGATAGGTGCCATACACAGAGGAACC
TTCTCAGGAAAAAAAGAAAAGTTGATTACAAATATATAACTTTTCTTTTT
TTTTTTCATTTTATTTATTTATTTATTTATTTTTTCCATTTTTTATTAGG
TATTTAGCTCTTTCATANTTCCAATGCTATACCAAAAGTCCCCCATACCC
ACTCACCCCCTATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGTGT
TCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTT
CCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCA
AGAGCTCCGGGGCACTGGTTAGTTCATAATGTTGTTCCGCCTATAGGGTT
GCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAG
CCCTGTGATCCATCCATTACCTGACTGTGAGCATCCACTTCTGTGTTTGT
CTTGCCCTGGCATATTCTTACAAGAGACAGTTACATCCTGGGTCCTTTAA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_a16.b1 MSMg01no133_a16.b1 CHROMAT_FILE:
MSMg01no133_a16.b1 PHD_FILE: MSMg01no133_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:44 2005
         (239 letters)



>mm_chr3_40902067_40902705
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctggcttctgaggacccctgcaaacacatgcatatagtcacaactacacacacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cctctggcttctgaggacccctgcaaacacatgcatatagtcacaactacacacacacat 466

                                                                       
Query: 61  aatttaaaataaaacatttttaaaaagatgttgaagtaagatgcctagggaagatgccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aatttaaaataaaacatttttaaaaagatgttgaagtaagatgcctagggaagatgccag 406

                                                                       
Query: 121 aattaaaacattcatgagtctcatgcccaagctaatattatttatcccaccatttttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aattaaaacattcatgagtctcatgcccaagctaatattatttatcccaccatttttata 346

                                                                      
Query: 181 taattagtattactataattatcctggtttacaacctaatagatagttagatgaattgt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taattagtattactataattatcctggtttacaacctaatagatagttagatgaattgt 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)