Query= MSMg01no133_c15.b1 MSMg01no133_c15.b1 CHROMAT_FILE:
MSMg01no133_c15.b1 PHD_FILE: MSMg01no133_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:54 2005
(522 letters)
>mm_chr3_147343006_147343927
Length = 922
Score = 971 bits (502), Expect = 0.0
Identities = 517/522 (99%)
Strand = Plus / Plus
Query: 1 ataaccatcaacgagttttgtctccctctgattgctacctcacataggcaggtgtaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ataaccatcaacgagttttgtctccctctgattgctacctcacataggcaggtataaatg 260
Query: 61 ccaacacacctgcctgaacactgaggaaaacacaaaggcccatcactcatccttacatgg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ccaacacacctgcctgaacactgaggaaaacacaaaggcccatcactcatgcttacatgg 320
Query: 121 ggctctgcttttaccctgaggtgctgtaggcactcctgtagcacggcatattttacaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctctgcttttaccctgaggtgctgtaggcactcctgtagcacggcatattttacaaca 380
Query: 181 ttcaaccctgtgcatgaatgttcccatgccagagcagattattcaaaataatagcctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaaccctgtgcatgaatgttcccatgccagagcagattattcaaaataatagcctgga 440
Query: 241 gtggtgcctatacacttcacaggactgcctaaccctaagccattgtttacttcaaaagca 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gtggtgcctatacacttcacaggactgcctaatcctaagccattgtttacttcaaaagca 500
Query: 301 gaggcaagtccctgagaatagattctgccaatcacacttcagtgttgccctgaaccctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggcaagtccctgagaatagattctgccaatcacacttcagtgttgccctgaaccctct 560
Query: 361 caggaaacctgctggttgtaagagaggttagcatttcactcttaggacctcattaagcat 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggaaacctggtggttgtaagagaggttagcatttcactcttaggacctcattaagcat 620
Query: 421 tctaaccaagaacagggcagagtaccagtaaacaatatagggcttaaaaagaagatattg 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tctaaccaagaacagggcagagtaccagtaaacaatatagggctttaaaagaagatattg 680
Query: 481 agaatcaaagacatctgcagtaagaaaaacatttcctcaaat 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatcaaagacatctgcagtaagaaaaacatttcctcaaat 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_c15.g1 MSMg01no133_c15.g1 CHROMAT_FILE:
MSMg01no133_c15.g1 PHD_FILE: MSMg01no133_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:54 2005
(532 letters)
>mm_chr3_147480428_147481357
Length = 930
Score = 951 bits (492), Expect = 0.0
Identities = 523/534 (97%), Gaps = 4/534 (0%)
Strand = Plus / Minus
Query: 1 attcctctcaggatttattttcaaacatcaattaggaccagaaattggacagatagtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 570 attcctctcaggatttattttcaaacatcaattaggaccagaaattggagagatagtagg 511
Query: 61 agagactacagcaccttgtgcaaagctggccggggtccacaggaaatacctatttggtgt 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 510 agagactacagcaccttgtgcaaagctggctggggtccacaggaaatacctatttggtgt 451
Query: 121 cacttctgtgagaagtccaggcatgcacaccacatggtcctgtactcactactaagacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cacttctgtgagaagtccaggcatgcacaccacatggtcctgtactcactactaagacag 391
Query: 181 gagtcaaacacaggtctttttgctaggtgttgcaggcatgcacagcagctgtgagtgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gagtcaaacacaggtctttttgctaggtgttgcaggcatgcacagcagctgtgagtgaga 331
Query: 241 aggaaggtatgggctctcttccagctgaagttaacatgagactattttccccaatgtcag 300
|||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct: 330 aggaaggtatgggctctctt-cagatgaagctaacatgagactattttccccaatgtcag 272
Query: 301 atcattgctagcaataattaaagaatgcatctttctataaatacaattctaccagctcat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atcattgctagcaataattaaagaatgcatctttctataaatacaattctaccagctcac 212
Query: 361 agaccaaaaaaa--atgcattttaagaaaatatattttttgtattttatttctttattat 418
||| |||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 211 aga-caaaaaaaccatacattttaagaaaatatattttttgtattttatttctttatcat 153
Query: 419 attctcccctttattctcaaatgatgatctaacttcatgctcgaccaaaaaccactttga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 attctcccctttattctcaaatgatgatctaacttcatgctcgaccaaaaaccactttga 93
Query: 479 tgaaataatatatctacattgacagctggctctggccaaggatgtctttttcta 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tgaaataatatatctacattgacagctggctctggccaaggatgtctttttcta 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 930
Length adjustment: 10
Effective length of query: 522
Effective length of database: 920
Effective search space: 480240
Effective search space used: 480240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
