AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACGAATTTTCTATAAAGTTTTATTATTTGGATGAAAATCATGAGCACT
TATGAGACAAATTTCCCATCCGCTCTCTGAAGCTCTAAACAAACTACATA
CAAAAGATACAGAGTTTCAGCATACATGTCAAGGCAAGCCCTGCAATACC
TAGGGAACAAACATGAACCGTGAGTGCCCACATTCTATCCCCTTTGCTAT
AGTTGAAGAAGAATAAAAATTCTAGGGTGGAGCCGGGTGTGGTGGTGCAT
GTCTTTAATCCCAGCACTGCACTCTGGAGGCAGAGGCAGGTGGATTTCTG
AGTTCAAGTTTTTCCTGCCCCACCCCCTGATTTCCAGGACAGCCAGGACT
ATACAGTGAAACCATGTCTCAAAAAGGAGAAGAAGAAGAAGAAAAAATAC
CCCCCCAAAAAAACACTCTAGGGTGGGGCAAAAGCTTTCAGGAGAACTCT
TATCTGGTTGTTGAACACATACCACAGCCTGGAACAAAGTCTATTTGGCT
ACATACCAGACAATATCTTGCAAATAGCTTTCTATTGCATATGACCAAGA
ATGATAAGGGATAAAATCTCTCTCTGTGTGTGTGTGCCTCTCTGTCTCTG
TATTTGTCTCTTTCTCTCTCTCCCCCCCTCTCTTTCTCTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCATCAGTGATCCACGCCTCTTCCGCTT
TCTGTATACAGGTTGTAATGTGGTTGCCACTATCCCATTCCACCATCTAA
TAGTAATGAGGCCTTTACCCCGGTCCTCTCAATTGAAAAAGTCTTACCTG
AGTGGCCATGGTGATGGGCTCCATGTGATACTAAATTTAGTGGGTCATGG
CAGTACAAACTCCAACATTTGAGATTAATGTCATGCTTCATTGACTTGTA
GCTTACGTCACGATTTAGCCAGAACAGGGAGGTTGAGAACAAGGCAGTAA
GGTAAAGCCAAGTCAGAACTTAAAGACAGCATAGGGTTCACTGTCTTCTA
CCAACCATCAACCAGTTCTTATTGATATGAGATGGCAGGTAGTTTTAAAA
GGATATAGTTGATATAACATGTCCTAAGTATGAAAGATCAAATCTAACTA
GTAATTTTAAGCAACTAAACCACAGTGGAATAACACTAAGTATTTACAGC
CTGAGTGCTGATCCTAAATGAGAAGAATTCGGGGAGCATCCTGTGTGTCC
TTTATATCATCTAGGCAGCTGTAAACATCCTGAATGCCCCAGCAGCACAC
ATTTCTCGTTTGTAATCAGAGGCTGGAATATCGAAGTCAAGTGACA

Query= MSMg01no133_i16.b1 MSMg01no133_i16.b1 CHROMAT_FILE:
MSMg01no133_i16.b1 PHD_FILE: MSMg01no133_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:22 2005
         (319 letters)



>mm_chr3_155060166_155060884
          Length = 719

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacgaattttctataaagttttattatttggatgaaaatcatgagcacttatga 64
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacaaattttttataaagttttattatttggatgaaaatcatgagcacttatga 264

                                                                       
Query: 65  gacaaatttcccatccgctctctgaagctctaaacaaactacatacaaaagatacagagt 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacaaatttcccatctgctctctgaagctctaaacaaactacatacaaaagatacagagt 324

                                                                       
Query: 125 ttcagcatacatgtcaaggcaagccctgcaatacctagggaacaaacatgaaccgtgagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcagcatacatgtcaaggcaagccctgcaatacctagggaacaaacatgaaccgtgagt 384

                                                                       
Query: 185 gcccacattctatcccctttgctatagttgaagaagaataaaaattctagggtggagccg 244
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 gcacacattctatcccctttgctatagtcgaagaagaataaaaattctagggtggagccg 444

                                                                       
Query: 245 ggtgtggtggtgcatgtctttaatcccagcactgcactctggaggcagaggcaggtggat 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtgtggtggtgcacgtctttaatcccagcactgcactctggaggcagaggcaggtggat 504

                        
Query: 305 ttctgagttcaag 317
           |||||||||||||
Sbjct: 505 ttctgagttcaag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no133_i16.g1 MSMg01no133_i16.g1 CHROMAT_FILE:
MSMg01no133_i16.g1 PHD_FILE: MSMg01no133_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:23 2005
         (540 letters)



>mm_chr3_155200328_155201267
          Length = 940

 Score =  951 bits (492), Expect = 0.0
 Identities = 528/540 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatcagtgatccacgcctcttccgctttctgtatacaggttgtaatgtggttgccacta 60
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 740 ccatcagggatccacgcctcttccactttctgtatacaggttgtaatgtggttgccacta 681

                                                                       
Query: 61  tcccattccaccatctaatagtaatgaggcctttaccccggtcctctcaattgaaaaagt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcccattccaccatctaatagcaatgaggcctttaccccggtcctctcaattgaaaaagt 621

                                                                       
Query: 121 cttacctgagtggccatggtgatgggctccatgtgatactaaatttagtgggtcatggca 180
           ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct: 620 cttacctcagtggccatggtgatgggctccatatgataataaatttagtgggtcctggca 561

                                                                       
Query: 181 gtacaaactccaacatttgagattaatgtcatgcttcattgacttgtagcttacgtcacg 240
           |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 560 gtacaaactccaacatttgagattaatgtcatgcttcattgagttggaccttacgtcacg 501

                                                                       
Query: 241 atttagccagaacagggaggttgagaacaaggcagtaaggtaaagccaagtcagaactta 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 atttagccagaacagggaggttgagaagaaggcagtaaggtaaagccaagtcagaactta 441

                                                                       
Query: 301 aagacagcatagggttcactgtcttctaccaaccatcaaccagttcttattgatatgaga 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagacagcatagggtgcactgtcttctaccaaccatcaaccagttcttattgatatgaga 381

                                                                       
Query: 361 tggcaggtagttttaaaaggatatagttgatataacatgtcctaagtatgaaagatcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggcaggtagttttaaaaggatatagttgatataacatgtcctaagtatgaaagatcaaa 321

                                                                       
Query: 421 tctaactagtaattttaagcaactaaaccacagtggaataacactaagtatttacagcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctaactagtaattttaagcaactaaaccacagtggaataacactaagtatttacagcct 261

                                                                       
Query: 481 gagtgctgatcctaaatgagaagaattcggggagcatcctgtgtgtcctttatatcatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagtgctgatcctaaatgagaagaattcggggagcatcctgtgtgtcctttatatcatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)