XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TCTAGTATTCCTCACCCAAAGCTATTATGGTTACTGTCCCAAAGTTCCTA
TGAATATTCAGTGTGTATAACTATATGCTGCTTGGATAACTTTTTCTTCA
AAAGTAATTCTAGAATACGTGGACACTCTCTATAGCCTTTATTGCAATTT
ACATTGCCTTCCTACTCACTGGAGTCAGGCTTTCTATAGCTTTTATGTAT
GTGAATCACTGGATAAAATAAATAACATTTCCATAGTGACCACAAGTCTT
GAAAGCAGTGCCAAGTATATCAGCTCTTGATGCCACTGCCTGCTGATGAC
AAATATTCTGAGATTTATGGCATTCTGAGGCCTCTCTTTCCTCATCTCTG
AAATGAGAATCTGTGATAAATTGATGGTTTTCTAAATATTATTTTTAGCC
AGAGTCACTTCTTTTTGTTGTCTTTTATTTCAAAATGAAATCTTAAGAAA
ACAAGTTGCACTTTATCATGGCCTATGATAACACTTAGTTGTATGCTTCA
AGGTAAAGCTCACTGAACTAGCCAAAAGAAAATAGCAAAATCTAAAAGCA
GGCAGAATATTGGGGCATATATTTCATCTTACCTTAACATGGGAGAGAAA
ATTCATGCAGGAAGGAAGCAAATTTTCACTACAGTCTTTAACTAGGCT

ATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATCCCAGGTGGTTCCCATTACACCTTCTG
TGTTTGCATTCCTCTGTTTTATGTAAGAATCCAGTTACCTCTTTGTACCT
TGCGAGTGTGTCACCCAACTTCCTTATTGTCTTCTGTATAAAAAGTTTGA
TGCTCGATTTGACAAATTACATTCAGATTCTACACAACCTCTCCTGTGTG
CATCTGTCTGTCATTCATCCGACGCTTTGCTCACCCGAGACTAGAGACCT
GTTCCAAGCAGACAAAGGGGCCCAGAGGGTCTAAGGCATCCAAGACTCTT
ACTTTCTCTTCTATTAGTTTCAGTGTATCTGATTTTATGTGGAGATCCTT
GATCCACTTCAACTTGAGCTTTGTACAGGAGATAAAAATTGGACCAATTT
GCATTTGGCTTCTTTTTCAAGTATCAAGTGTCCAGAGGTGCATGGAATTG
TTTCTTTGTCTTCAACCCTATTCCATTTACCTACTATCTATCTCTGTACC
AATACCATGTGATATTTATCACTATTGTTCTGTTGTACTACTTGCAGTCA
GGAAAGGTGGTTCCAGAAGTTCTTTTATGGTTAATAGTTTTGGCTACCCT
GGTTTTTTGTTTTTGNTTTTGTTTTTTGGTTTTTGTTTA

Query= MSMg01no133_o01.b1 MSMg01no133_o01.b1 CHROMAT_FILE:
MSMg01no133_o01.b1 PHD_FILE: MSMg01no133_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:48 2005
         (547 letters)



>mm_chr3_16819368_16820314
          Length = 947

 Score = 1021 bits (528), Expect = 0.0
 Identities = 540/544 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatctagtattcctcacccaaagctattatggttactgtcccaaagttcctatg 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatctagtactcatcacccaaagctattatggttactgtcccaaagttcctatg 263

                                                                       
Query: 64  aatattcagtgtgtataactatatgctgcttggataactttttcttcaaaagtaattcta 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 aatattcagtgtgtataactatatgctgcttggataacttgttcttcaaaagtaattcta 323

                                                                       
Query: 124 gaatacgtggacactctctatagcctttattgcaatttacattgccttcctactcactgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatacgtggacactctctatagcctttattgcaatttacattgccttcctactcactgg 383

                                                                       
Query: 184 agtcaggctttctatagcttttatgtatgtgaatcactggataaaataaataacatttcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtcaggctttctatagcttttatgtatgtgaatcactggataaaataaataacatttcc 443

                                                                       
Query: 244 atagtgaccacaagtcttgaaagcagtgccaagtatatcagctcttgatgccactgcctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atagtgaccacaagtcttgaaagcagtgccaagtatatcagctcttgatgccactgcctg 503

                                                                       
Query: 304 ctgatgacaaatattctgagatttatggcattctgaggcctctctttcctcatctctgaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgatgacaaatattctgagatttatggcattctgaggcctctctttcctcatctctgaa 563

                                                                       
Query: 364 atgagaatctgtgataaattgatggttttctaaatattatttttagccagagtcacttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgagaatctgtgataaattgatggttttctaaatattatttttagccagagtcacttct 623

                                                                       
Query: 424 ttttgttgtcttttatttcaaaatgaaatcttaagaaaacaagttgcactttatcatggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttttgttgtcttttatttcaaaatgaaatcttaagaaaacaagttgcactttatcatggc 683

                                                                       
Query: 484 ctatgataacacttagttgtatgcttcaaggtaaagctcactgaactagccaaaagaaaa 543
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 ctatgataacacttagttgtatgcttcaaggtagagctcactgaactagccaaaagaaaa 743

               
Query: 544 tagc 547
           ||||
Sbjct: 744 tagc 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)