Query= MSMg01no134_g23.b1 MSMg01no134_g23.b1 CHROMAT_FILE:
MSMg01no134_g23.b1 PHD_FILE: MSMg01no134_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:50 2005
(727 letters)
>mm_chr3_147621791_147622916
Length = 1126
Score = 1336 bits (691), Expect = 0.0
Identities = 718/727 (98%), Gaps = 1/727 (0%)
Strand = Plus / Minus
Query: 1 gcccctgctcaagtctcaacaggattggttgtattgaggatgccatttctccacacacaa 60
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 926 gcccctgctcaagtctcaacagggttggttgtattgaggatgccatttccccacacacaa 867
Query: 61 acctggagaaacattcagaccttagaaaagtctccttattccttcctgctaaggaagaaa 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 866 acctggagaaacattcagaccttag-aaagtctccttattccttcctgctaaggaagaac 808
Query: 121 gtctccttgggtataggattctacctctgcagggaagctggtacaggttagacttaaagt 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 807 gtctccttgggtataggattctacctctgcagggaaactggtacaggttagacttaaagt 748
Query: 181 cctgctaagtcccaccctaagtgcgcagagaacatataggaaacacaggaggtgctttta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 747 cctgctaagtcccaccctaagtgcgcagagaacatataggaaacacaggaggtgctttaa 688
Query: 241 aaacatttcaacaagtgaacaagtttagattcagccacaatattgttgtttacaagtaca 300
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 687 aaacatttcaacaagtgaacaagtttagattcagccacaatagtgctgtttacaagtaca 628
Query: 301 gctcattatacttgtataatggggcaaatgttatattcattttccaaatggcactgctga 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gctcattatacttgtttaatggggcaaatgttatattcattttccaaatggcactgctga 568
Query: 361 gaccctttgtgattaaacactttggtcaagctcatgatcgaatcagcagaacggaatctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaccctttgtgattaaacactttggtcaagctcatgatcgaatcagcagaacggaatctc 508
Query: 421 aaatccaggaaatggacacatctgaaggtctccttggctcgaaatgcctttcccatgcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaatccaggaaatggacacatctgaaggtctccttggctcgaaatgcctttcccatgcaa 448
Query: 481 ggaagaagagctaaactgatcttgtttgatttgttgaccagtgcattgtttactaattac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggaagaagagctaaactgatcttgtttgatttgttgaccagtgcattgtttactaattac 388
Query: 541 aagaaactgtctattaactttgaacatagtttttaattctgctttagaacttcaaatctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aagaaactgtctattaactttgaacatagtttttaattctgctttagaacttcaaatctg 328
Query: 601 cagattgttagcatcccacatgctttgacacaatgtgaatggaactcagcatcaaactgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagattgttagcatcccacatgctttgacacaatgtgaatggaactcagcatcaaactgt 268
Query: 661 taacctacaaaagatttcaaggagttttaagtaaaggaggcgggggcagtgactcagctg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taacctacaaaagatttcaaggagttttaagtaaaggaggcgggggcagtgactcagctg 208
Query: 721 tgtgatt 727
|||||||
Sbjct: 207 tgtgatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1126
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1116
Effective search space: 800172
Effective search space used: 800172
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_g23.g1 MSMg01no134_g23.g1 CHROMAT_FILE:
MSMg01no134_g23.g1 PHD_FILE: MSMg01no134_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:50 2005
(790 letters)
>mm_chr3_147516254_147517444
Length = 1191
Score = 1423 bits (736), Expect = 0.0
Identities = 778/792 (98%), Gaps = 3/792 (0%)
Strand = Plus / Plus
Query: 1 actaaagaccaagttcatgtga-agtcaccccttggattgcaagccaacgtccttgggag 59
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct: 201 actaaagaccaagttcatgtgaca-tcactggttggattgcaagccaacgtccttgggag 259
Query: 60 tgttggcctccttccaacaggaatcaaccgcagttcagcaagctctagatctgccctgct 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttggcctccttccaacaagaatcaaccgcagttcagcaagctctagatctgccctgct 319
Query: 120 tgtgcagtccacagctttgagcatttatctgcactctgcagtcactggtgtaatcttgtc 179
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 320 tgtgcagtccacagctttgagcatttatctgcactgtgcagtcactggtgtaatcttgcc 379
Query: 180 caagttgaagagtcaatgtttgattctgtgcatttgctggattaccattatagacaggtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 380 caagttgaagagtcaatgtttgattctgtgcatttgctggattaccattataggcaggtt 439
Query: 240 ggtgcttggtgtttgtgtaaacccttatacatatgaagaaggaaagaaaaagaaatcagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtgcttggtgtttgtgtaaacccttatacatatgaagaaggaaagaaaaagaaatcagg 499
Query: 300 gacggtcagggtgatgaacacactgtcataaatgctacattttagccctgttattctacc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacggtcagggtgatgaacacactgtcataaatgctacattttagccctgttattctacc 559
Query: 360 tttccctttggatgtcatgtgcaagttcaaggtcctgtaaacaccttttgttcacaggcc 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 560 tttccctttggatgtcatgtgcaagttcaaggtcctttaaacaccttttgttcacaggcc 619
Query: 420 acctgaactgtagacagtgagtgctcccaaagtctaactcagcgaatcacaaactgtttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acctgaactgtagacagtgagtgctcccaaagtctaactcagcgaatcacaaactgtttc 679
Query: 480 agctttgatgctctgctgttttgcaggtgtgcataggaaagcttgttatcgatgctatat 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 680 agctttgatgctctgctgttttgcaggtgtgcttaggaaagcttgttatcgatgctatat 739
Query: 540 tgcagatgtgaagaaattccctacaagtgtataatgataacccattaataaataataaga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcagatgtgaagaaattccctacaagtgtataatgataacccattaataaataataaga 799
Query: 600 ttaagaattagaatcatctatcagttatacaatacacaaaataatgatgagtacaattaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttaagaattagaatcatctatcagttatacaatacacaaaataatgatgagtacaattaa 859
Query: 660 actaaaatttgaagatcccttcttatagtaactattatcaaaacttgaaatatgtatttc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 actaaaatttgaagatcccttcttatagtaactattatcaaaacttgaaatatgtatttc 919
Query: 720 aaaaaa-cctttcaataatgattggctttcatgtcttatatgatgaagtacctggtagat 778
|||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 920 aaaaaaacctttcaataacggttggctttcatgtcttatatgatgaagtacctggtagat 979
Query: 779 agctatataaaa 790
||||||||||||
Sbjct: 980 agctatataaaa 991
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 790
Length of database: 1191
Length adjustment: 10
Effective length of query: 780
Effective length of database: 1181
Effective search space: 921180
Effective search space used: 921180
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
