BAC Information

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BAC

Clone NameMSMg01-134H16
Chromosome3 (Build37)
Map Location 69,932,348 - 69,932,841
singlet/doubletsinglet
Overlap genenone
Upstream geneArl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
Downstream geneLOC100041384, LOC625868, LOC670542, EG625901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134H16.T7 (MSMg01no134_h16.b1)MSMg01-134H16.TJ (MSMg01no134_h16.g1)
ACCAG341184AG341185
length1,2101,169
length of high quality
(start - end)
292 (497 - 788)494 (131 - 624)
definitionCHROMAT_FILE: MSMg01no134_h16.b1 PHD_FILE: MSMg01no134_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:55 2005CHROMAT_FILE: MSMg01no134_h16.g1 PHD_FILE: MSMg01no134_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGAGACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAA
TTCATATAGCACTACACAGGCGATCTAAGGAACACGTGGAAACTATAGAA
AAATAGGGAGCATGTCTCCATTTCATGCCCCACCATAGCACAGTCTAAAA
CCACAAATAAAGACAAGAGTTGTTTTCTCCTACTTGAAAAATATTTTCTC
TATTAAAGTTTGTCATTTAGAGTTGGAAGAGCAAAAAAAAAAGGTTTTGC
TTAGGGGTATGATGAGAATGGATATAATATGTATAAACTATCAAGGTAGT
AATGGTACTTAGTTACTCAATTTATAAAAAATTTAACATAAACACACGCA
AGAACTGATTAACAATTTATAGTTGTTCACTGAGGCAACAAACCAACATT
TATAAAACTTGTTTGTACATAATCTGGACAAGTTGTTTGTACAAAAATAT
TTTTTTGCACCCCATAATCTATTAAGCGAGACTACAAAAAAAGAGAAGTT
TTCTCTCTTACACATTTTCATGTTAAAATTTAATTAATAATAACTATATT
ATAACAATATGGATGTGTAATTTCATTGTTCACAATATACACAAAATGAG
TAGCAACTCATAGAACTCAAGGGTGAATCTACTACTATTATTTTACTAAA
TGGACATAGTAGTTAAATGACTTCATTATACCATAGATCAGTGTGCCTCT
TAACACGACCAGAGAATCTTCTCCTTCCAGGAAATGGAAACTAACCTAGA
GACCCTCCACATACAAAGAAGATAAAGCTCTGGAGTTTTCAGCACTAAAT
GGGAAGTGTGAAATACCCGATTCCCTTCAAGGGAGTAATTTTCATAGAAG
ATGGAGAAGAAAACATGTAATAGCCAGGGGTATCAAGGGAAAAGTGCTTC
CCAGACTTAACAGGTGAAGTTGTTCATAAAAAACACTCAGTTATTGTGAC
TGCATGCCCAAGACTGGTTCAGAATGGAATCCCAAATAAATCTCTTAAAA
GGTCAGTAGGAAACAAGGTTGTGATAATCCCCCAACATAAATTTTAAAAA
CTGTGTGTGTATTTGTATAACTGTGCTCTAAAAAAAAAAAAAATATTCGC
TTTTTTTTTATAGTGTTGTAACTCCCTTGTTACAAGGCCCTTGGTTTTAT
ATTTCTATATTTTCTCTTCCCCTGCAATAAATTTTTTCCCCCTATAAAAT
TTTATCTTCA
TTTTNGTAAGATGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTCT
GAACACCCTTTTTAAATAGTGTTACCCAGTTCTCTGGAGTGTAACTTCTT
GAGTTCTTTGTATGTATTGGATATTCGCCCTCGGAATTGAAGTTTTTAAT
AAGCTTGTGCTGTCACATTGATTATAATGCTGTGGCTTGCTTTGGGGACA
GTTTTTTTAAAAAGTAAATTTAGAGAGTATTCTGCCTTTAAAAGAATATT
CTCTAGGCTATTTTAATTCAGTTACATCCTTTTATTTTTTTCTTTTTAAA
ATTTATTTCTAATATATTTTAATTGAAATATAATTACATTATTTTTTCCT
TCCCACGTCTCTGTCTGTTTCCCAATTCCTTTCCCTCCAACTCTTTCTAT
TCCTTCTCACCTTCAAATTGATACTCCCTTCTTTCTGATTACTATTGTTA
TATATAAATATATGTATGCTCGAATATAAAAACAAAGCAGCTGAATACAT
TTCGATTGTGTGTATATGGCTTGTGTGTATATGATTCACTTTATACCTTA
TGTCCCCGAGGGTGGCTAACTCCTAGCCGTCATCTTTGCCAGTAGTTCCT
CATCCTGGGGTGGATTCTCTGAGATTTCCCCTTTTCTGTATTAGCACCTT
TATTGATGCAGCAGCCACTGTGCAGATCTGGTATATGCAGGCATTTCTAG
GAGACACTGTTTCATATCATGCTTCTTGCCATTCTGGCTCTTACAATCTT
TCTGCCTCATCTTCTGCAGTGCCATAGATGCAGGAACTGTGGTGTAACTG
TCTCCCTTGGGCTGGTTTTTTAGTGATTCATTGATTTTGAATTTCCGGCC
AGGCTTCTATCCTGCTATTAAAAAGAGGTGTTGATTGTTCTCTTTACTTG
TCTATTATTGTTTTAGGTTTTTAATTGTTTCCTGTGTTTTTTTTTTTTTC
TTATATATTTTTCTTTATTTTCTTCTTTCTTTTTTTTATTTTTTTTTTCT
TCTCTCTATTTATTTTTCTTTTTTATTTCTATTTTCTCTTCTTTTCTCTT
TTTAGTTTTCTATATTATCTTATATTCTTTATCTTTTTTTTCCTTCATTC
TCTATGTGCTTTTTACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_h16.g1 MSMg01no134_h16.g1 CHROMAT_FILE:
MSMg01no134_h16.g1 PHD_FILE: MSMg01no134_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:55 2005
         (494 letters)



>mm_chr3_69932148_69933041
          Length = 894

 Score =  909 bits (470), Expect = 0.0
 Identities = 488/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctggagtgtaacttcttgagttctttgtatgtattggatattcgccctcggaattga 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctcgagtgtaacttcttgagttctttgtatgtattggatattcgccctcggaattga 260

                                                                       
Query: 61  agtttttaataagcttgtgctgtcacattgattataatgctgtggcttgctttggggaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttttaataagcttgtgctgtcacattgattataatgctgtggcttgctttggggaca 320

                                                                       
Query: 121 gtttttttaaaaagtaaatttagagagtattctgcctttaaaagaatattctctaggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttttttaaaaagtaaatttagagagtattctgcctttaaaagaatattctctaggcta 380

                                                                       
Query: 181 ttttaattcagttacatccttttatttttttctttttaaaatttatttctaatatatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaattcagttacatccttttatttttttctttttaaaatttatttctaatatatttt 440

                                                                       
Query: 241 aattgaaatataattacattattttttccttcccacgtctctgtctgtttcccaattcct 300
           ||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct: 441 aattgaaatataattacattacttctcccttcccacgtctctgtctgtttcccaattcct 500

                                                                       
Query: 301 ttccctccaactctttctattccttctcaccttcaaattgatactcccttctttctgatt 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccctccaactctttccattccttctcaccttcaaattgatactcccttctttctgatt 560

                                                                       
Query: 361 actattgttatatataaatatatgtatgctcgaatataaaaacaaagcagctgaatacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actattgttatatataaatatatgtatgctcgaatataaaaacaaagcagctgaatacat 620

                                                                       
Query: 421 ttcgattgtgtgtatatggcttgtgtgtatatgattcactttataccttatgtccccgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ttcgattgtgtgtatatggcttgtgtgtatatgattcactttataccttatatccccgag 680

                         
Query: 481 ggtggctaactcct 494
           ||||||||||||||
Sbjct: 681 ggtggctaactcct 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)