BAC Information

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BAC

Clone NameMSMg01-134M12
Chromosome3 (Build37)
Map Location 119,992,444 - 119,993,197
singlet/doubletsinglet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134M12.T7 (MSMg01no134_m12.b1)MSMg01-134M12.TJ (MSMg01no134_m12.g1)
ACCAG341409AG341410
length1,2301,510
length of high quality
(start - end)		754 (93 - 846)---
definitionCHROMAT_FILE: MSMg01no134_m12.b1 PHD_FILE: MSMg01no134_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:32 2005CHROMAT_FILE: MSMg01no134_m12.g1 PHD_FILE: MSMg01no134_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTTTTTTTNNNCCATTGGGCGCATAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATTTTCTAATTAACCCCCTTGAGTTTTTAAACAACCAT
GTGTTCTTCTGTCTTCCCTGGAGAAGCAAATGCTGCAGCAGAAGTGTGGT
TTCGAGGAACTCTTACTTGGGCATTTCTACCTCTTATTTAAGCATAAGTG
ATGTCTTATCAGCTTCTAGAAATTTTTCTGTTTAAAGTGGGGCATGTAGA
CTAGCCAGTTGACATCCAATTCATTTGCTATAGGTCCTACATATCTGAGA
AGACTACTGTATGGAGTGGCAGAAATGTAACTTAAGAGTCTCAGAGGATC
ATCGAGCAGCTCTCTCTATAATGTATTTAGCATCCAAGTCTAGGGGTGTT
GCTTATGATGTCTTTAAAAGGCAACCTTTCTTTGTACAATAATTTAATGA
GAAGTATTAAAAATCAAATTTATTGACATTCATTGAGAACTGAGAAGTCT
GTATCACCAGAAATGCAAGCCTTCTCACATCTAAACCAATCATAATAACA
GTAGCAGAGATAATGAAAAAGGATAACCAATAGCAGGTGCTACAAGTGAA
TATATCATAATTGTCCTAAGCAGAAGCTAAGAGCTGGTCTCGGCAAATTG
AATATGATTGTTCATTTTTAACAGGGTTAATGTCTATTAATGACAGATGA
TAAACTTTAAGTATCTTATGAATAATAAATGCACTAGTCAGATGCCTGAG
GTCTGTAGCAAATATGTTTTCAAGGCAAGTGCAGCTAGGTACTCTCTGTT
TGGCCTTGGAAACCTTATACGCACAGATGATTGCAAAATGCTCCTGAAGA
AAATTTAGGCCAACTTCTCACACTTTAGAACTGAGAAACCATGCAAGAAT
GTGTGGTACTCTTCTCAAACCTCTGAGGCTTTAGTGGAGGGCAGAAAACA
TGGCCAAGTTCTTCTTGGATGGTTTAACCAAAAAACTGGTTAAAAAAAGG
TTTTCTTTGTTCCCGGGCCCGGTTGAATTTCCTAAACTTAAAACCCCTGG
GCCCTTTTAAATAAAAACCTGGTATCCCTCTATAAGTGGTTTTGGATTTT
TTCATTTCTTTGTTTGTGGGGGTTATATCTTATTATATTTCTTCCCCTCC
CCTACTACAACATTTATGTCCCTTTCATTTTCAAAATATTTTTTATCTCT
TTTTTTTTTTTTGTGTGTGTTCGGTGGCGC

CGCTCCTTTNTTTTCGCTTGTGTGCGTGCGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATAAGGCAGGAGAGAGAAGG
AGAGGAAGGAGAGGGCCCTTGACAGATTAAGAGGAGGCCCAAGGAAGATG
GANCAGAAGCACGTGGCTCTGAGATACTGCTAGTTGCATGTCCTCTCAGA
GTTGTTGAATTTAGTAGTGTCGTGCTATATCTGTTCTTTCTAGGTTCCTT
TTTGTTTTCTCAGTATTTGAGTTTGTGTTTTCCTTGCTCCTTCTTATTTT
TTTTGTTGTTTTTATGTTCTTTTCTTTTCTTATTTTTTTTTTTTTCTTTT
TTATTCTTCTTCTTTCCATTTGTTTCTTTTTCTCTTTTTTTTGCTTTCTT
CTTTCTTTTTTTTTTTTCACTCCACCGGCTCCCCCTCTTTTTTTTGTTCT
TCTTTTCCTCCCTCCTTTTTTTTTCTCTCTCCTTTCTTTTTTTTCTTTTT
TTTCTCTTCCCTTATTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTTTTC
TTTTTTTTTTTTTTTCTCTTCTTCTTCCTCTTTTTCTTTTTTTTTTTCTT
TCTTTTTCTTCTTTTCCTTTCTTTTCTTTTTTTTTTTTTTTTTTCTTTCT
TTCTTTTTTTCTTTCTTTTTCTTTTCTTTTTCTTCCTTCTTTTTTTTCCT
TCTTTTTTTTCTTTTTCTTCTTTCCTTTTTTTTCTTTTTCTTTCCCTTTT
CCCTCCTTCTTTCTTTCCTTTTTTTGTTTTTCTTCTTCTTCTTTCCTTTT
CCTTTTTTTTCTTTCTACTTCTTTTTGCTGTTCCTCTCCTTCCTCATTCT
CTTTCATCTGCTCTTTCTCTTTCCTTTTTTCCTCTTTTTTCTTTCTTTCT
TTTTTCTCTTCCTTCTTTTCTTCTTCTTTTTCTCCTGTTCGTTCTTTTTT
CTTTTTTTCTTNCCCTTTTTTTTCTCTCTTCGTTTATGTTGTCTCCCTTC
TCCTTTTTTTCTTCTTTTTCTCTTTTTTTCCTTCTTCGCTCTCTTTCTTT
TTTTCTTCTCTTCCTTTTTGTCCTTTTCTTCTTCTTCTTCTTCTCTTCTT
CTTCTTCCTTTCTTTTCTTTTTTTTCTTTCGTTCTTTTCTTTTTTTCTCT
TCTTTTGTTTTCTTTTTTTCTTTTATCTTTTTTTCTTCTTTTTTTTTTGT
GTTTTTTCTTTTTTTTCTATCCTTCTCTCTCTTTTGCTTATCTTATTTAG
TTTTCTCTTCTTTTTTCTCTTTCTGTCTTTTTCGTGCTCCTTCTGTACTT
TTTCTCCCATCTTTAGCTTTCTTGTTCTTCCTCTCTCTCTTTGCCTTCTC
CTCTCTTCTTCTGTCCTTCTTTCTTTGATCTTTTCTTCTCCTTCTTTTCT
CTTTTCTTTTCTCTCTTCCTACTTCCTCTCTTCTCTCTCTCTTTCTTTCT
TCTCTCTCTGCTCGTGCTCCTCTGTATTGTCTCTGTTCCTTGTTCTTCTC
TTCTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_m12.b1 MSMg01no134_m12.b1 CHROMAT_FILE:
MSMg01no134_m12.b1 PHD_FILE: MSMg01no134_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:32 2005
         (754 letters)



>mm_chr3_119992244_119993397
          Length = 1154

 Score = 1357 bits (702), Expect = 0.0
 Identities = 741/754 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaccatgtgttcttctgtcttccctggagaagcaaatgctgcagcagaagtgtggttt 60
           ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 954 acaaccatgtgttcttctgtcttccttgaagaagcaaatgctgcagcagaagtgtggttt 895

                                                                       
Query: 61  cgaggaactcttacttgggcatttctacctcttatttaagcataagtgatgtcttatcag 120
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 894 tgaggaactcttacttgggcatttctacctctaatttaagcataagtgatgtcttatcag 835

                                                                       
Query: 121 cttctagaaatttttctgtttaaagtggggcatgtagactagccagttgacatccaattc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 834 cttctagaaatttttctgtttcaagtggggcatgtagactagccagttgacatccaattc 775

                                                                       
Query: 181 atttgctataggtcctacatatctgagaagactactgtatggagtggcagaaatgtaact 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 atttgctacaggtcctacatatctgagaagactactgtatggagtggcagaaatgtaact 715

                                                                       
Query: 241 taagagtctcagaggatcatcgagcagctctctctataatgtatttagcatccaagtcta 300
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 714 taagagtctcagtggatcattgagcagctctctctataatgtatttagcatccaagtcta 655

                                                                       
Query: 301 ggggtgttgcttatgatgtctttaaaaggcaacctttctttgtacaataatttaatgaga 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggggtgttgtttatgatgtctttaaaaggcaacctttctttgtacaataatttaatgaga 595

                                                                       
Query: 361 agtattaaaaatcaaatttattgacattcattgagaactgagaagtctgtatcaccagaa 420
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 594 agtattaaaaatcaaatttattaacattcattgagaactgagaagtctgtattaccagaa 535

                                                                       
Query: 421 atgcaagccttctcacatctaaaccaatcataataacagtagcagagataatgaaaaagg 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 534 atgcaagccttctcacatctaaaccaatcataataacagtagcagaaataatgaaaaagg 475

                                                                       
Query: 481 ataaccaatagcaggtgctacaagtgaatatatcataattgtcctaagcagaagctaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ataaccaatagcaggtgctacaagtgaatatatcataattgtcctaagcagaagctaaga 415

                                                                       
Query: 541 gctggtctcggcaaattgaatatgattgttcatttttaacagggttaatgtctattaatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gctggtctcggcaaattgaatatgattgttcatttttaacagggttaatgtctattaatg 355

                                                                       
Query: 601 acagatgataaactttaagtatcttatgaataataaatgcactagtcagatgcctgaggt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 acagatgataaactttaagtatcttatgaataataaatgcactagtcagatgcctgaggt 295

                                                                       
Query: 661 ctgtagcaaatatgttttcaaggcaagtgcagctaggtactctctgtttggccttggaaa 720
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctatagcaaatatgttttcaaggcaagtgcagctaggtactctctgtttggccttggaaa 235

                                             
Query: 721 ccttatacgcacagatgattgcaaaatgctcctg 754
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 ccttatacgcacagatgattgcaaaatgctcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 754
Length of database: 1154
Length adjustment: 10
Effective length of query: 744
Effective length of database: 1144
Effective search space:   851136
Effective search space used:   851136
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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