Query= MSMg01no134_p14.b1 MSMg01no134_p14.b1 CHROMAT_FILE:
MSMg01no134_p14.b1 PHD_FILE: MSMg01no134_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:57 2005
(401 letters)
>mm_chr3_95357453_95358253
Length = 801
Score = 605 bits (313), Expect = e-177
Identities = 373/403 (92%), Gaps = 20/403 (4%)
Strand = Plus / Minus
Query: 4 ggaattctaatctcaggacctcgaaaatgtgactttatttggaagtaggggcactgtaga 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggaattctaatcacaggacctcgaaaatgtgactttatttggaagtaggggcactgtaga 528
Query: 64 tgcctttaattagtagatgtcccccc-----ttagattaagatgaagtcattaggtcagc 118
|||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 527 tgccattaattagtagatgt-----cattaattagattaagatgaagtcattaggtcagc 473
Query: 119 cttaatccagtagtactgacctcagcacacacgaggccttgcgaggtttgagggcaagag 178
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 472 cttaatccagtaggactgaagtctgcacacacgaggccttgcgaggtttgagggcaagag 413
Query: 179 agaggcctgtttctacaagtcaaagaatggaaatcacacggctgcaagcctcaaaatctg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agaggcctgtttctacaagtcaaagaatggaaatcacacggctgcaagcctcaaaatctg 353
Query: 239 gggtggtgcttaactccttccttccttccttccttccttccttccttccttccttccttc 298
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gggaggtgctcaactccttccttccttccttccttccttccttccttccttccttccttc 293
Query: 299 cttccttccttcctccccccttccctccccactctttctctctctctctttctttctttt 358
|||||||||| ||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 292 cttccttcct----ccccccttccctccccactct--ctctctctctctttcttt----t 243
Query: 359 cattgtgtgtgtttgtgtgtgtgtgtgtgtgagatgtgtccca 401
|||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 242 cattgtgtgtgtgtgtttgtgtgtgtgtgtgagatgtgtccca 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_p14.g1 MSMg01no134_p14.g1 CHROMAT_FILE:
MSMg01no134_p14.g1 PHD_FILE: MSMg01no134_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:57 2005
(656 letters)
>mm_chr3_95214907_95215962
Length = 1056
Score = 1220 bits (631), Expect = 0.0
Identities = 648/655 (98%), Gaps = 3/655 (0%)
Strand = Plus / Plus
Query: 2 ctgcaccagcgtcatccgccatttggtgttttcccgaagaagaagaagcggccttctctt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctgcaccagcgtcatccgccatttggtgttttcccgaagaagaagaagcggccttctctt 261
Query: 62 tcacttggcaagtaccacaccaactaaaccatatctttaccatctttcgttatctttcta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcacttggcaagtaccacaccaactaaaccatatctttaccatctttcgttatctttcta 321
Query: 122 aaaacagatgaagaatatgtccactgtttgagtaagccatgaaattgccattttctaaga 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aacacagatgaagaatatgtccactgtttgagtaagccatgaaattgccattttctaaga 381
Query: 182 atggaaatctacatcatttccaaatctcctctcacttttacccttcctttctttttcctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atggaaatctacatcatttccaaatctcctctcacttttacccttcctttctttttcctt 441
Query: 242 ccctttctacctcttctttctctttctcctccttcttttatacttctttgagactgtctc 301
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 442 ccctttctacctcttctttctcttcctcctccttcttttatacttctttgagactgtctc 501
Query: 302 atgtagctggttttaaacttttgatcttttctctctcattcccaggctggactcaaactc 361
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 502 atgtagctggttttaaacttttgatcttttctctctcattcccaggctggcctcaaactc 561
Query: 362 actagggagtcaaggctaataatgtcgaaccatttattctcctgtctccatttctaaagt 421
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 562 actagggagtcaaggctaat---gtcgaaccatttattctcctgtctccatttctaaagt 618
Query: 422 gttgaaattatgtgcataggttattatgtcccatgttgcttcctacctataagacccact 481
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gttgaaattatgtgcatagattattatgtcccatgttgcttcctacctataagacccact 678
Query: 482 atcccttaaagaaacacactttggggcttaaaaggtgactgagtgttaaagagcgcttgc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atcccttaaagaaacacactttggggcttaaaaggtgactgagtgttaaagagcgcttgc 738
Query: 542 tgctcttgcataggatctgggtttggtttccaaaacacacatagcagctcaaaactgtct 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgctcttgcataggatctgggtttggtttccaaaacacacatagcagctcaaaactgtct 798
Query: 602 ataactacttttagaggatctgacactcttctggcttccacaggcttgaggcaga 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ataactacttttagaggatctgacactcttctggcttccacaggcttgaggcaga 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
