BAC Information

Click to search

BAC

Clone NameMSMg01-135H17
Chromosome3 (Build37)
Map Location 92,728,021 - 92,728,623
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik
Downstream geneLce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135H17.T7 (MSMg01no135_h17.b1)MSMg01-135H17.TJ (MSMg01no135_h17.g1)
ACCAG341929AG341930
length740727
length of high quality
(start - end)		---601 (56 - 656)
definitionCHROMAT_FILE: MSMg01no135_h17.b1 PHD_FILE: MSMg01no135_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:37 2005CHROMAT_FILE: MSMg01no135_h17.g1 PHD_FILE: MSMg01no135_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAGATCCGC
GGAATTCTCCCAGTATACACATAGAGATCTGCTCTAGGCCCTAGTTTCAT
TCTCTCTGGACCCTACATCAGACTTTCTGTACCACCTATATGTCTTGTCT
AATGCCATCTCCTGTTGATCTCTTTTGTTTCGTTGCCTTAATGATTGTGA
CAATGTCTAAGTCGATGTTTTAAGTCTCATGTXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACTCGGTGATTCACTCTCGTTTAGTCTACACT
GACTTTACCGAGAGCCTTCACTATAAACATAGATTGACCACTGCGCGAGA
GGCCCTGCTAGAATCTGATTTTACACTCAAGAACTCTGCAGCCTCTTATC
TCTAAAGGATTTTTGATGATGACTGATTTTTCCTACAAATTTCTCTACAG
TTTTTCGATCATTGTGTTTATACATTCGCGCGTTGCTTTTTTATCTTACA
CCCTCACTATGTTGAGTACAACTCTTTAATTGATCTTGTTCTCTAAGACT
CATGTAGACCCTTCATTTGATTTTTGATTGAACTTCTTTATTTAATATGA
CCTACTATGTTTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGACATAGTACTG

GTAGCCTGGCGCCGCCTGGCTTCGAATATAGGTGACCTATAGAAGATCTG
CGGAATCTCTTACAAATGAAGAGTAAAATGGTGTGGGACTTGCAAAAGTA
AATCCCTTTTGGGGTCACCAACTTTGACTTTGGAGTGGAGCAGAGCTTAT
TTTTACAGTGAACTATGGTGGTCATTTTCCATGTTAGCTGTGTGTGTGGC
TTCATCTTGATGGTTTGGGTTTCTCAATATTACAGAAGAACATATGCCCT
ATGGTTCTTAAACTAACTTCAGAATGATGTCCTACCTTGCCAATAGTCAC
AGTTTAAGTTGAATGTATTTGGAGGCTGAGCATGGAGAATCTAGACTAAG
AACAAAAATCTGTGTAAAATGATGGGAATTTAATGGAATAAGATATCTCA
AATACCTTTGCTTTTTCATTTACTCTCAAAGTCAACTGGGCACCTGCTCT
GCATTAATATTCTTGGATACATACCTTCTTATTAAAGAGAAAGAAACATA
TCAAGAGGAAGTTTGAATGTGAGTCCACGCTACCTCTGGTCCATATCTCA
AATCCTTCAACTGACTGGGACAGAGTGCTCTGAGAAAATAACCATGGACA
TGGGATTCCTTTTGAGTAGGATGAAGGATCTGTAGGATAGGCTTTATGAT
CTTCATGATGCTCTTGGGAAGAACTCTACAGAGTCTGAATTAAGATGCAT
CACAGATGAAACGGAAAGAATGGAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_h17.g1 MSMg01no135_h17.g1 CHROMAT_FILE:
MSMg01no135_h17.g1 PHD_FILE: MSMg01no135_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:37 2005
         (601 letters)



>mm_chr3_92727821_92728823
          Length = 1003

 Score = 1058 bits (547), Expect = 0.0
 Identities = 589/603 (97%), Gaps = 2/603 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcttac-aaatgaaga-gtaaaatggtgtgggacttgcaaaagtaaatcccttttggg 58
           |||||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct: 803 tctcttacaaaatgaagaggtaaaatggtgtgggacttgcaaagggaaatcccttttggg 744

                                                                       
Query: 59  gtcaccaactttgactttggagtggagcagagcttatttttacagtgaactatggtggtc 118
           |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct: 743 gtcaccaactttgactttggagtggagcagggcttatttctactgtgaactatggtggtc 684

                                                                       
Query: 119 attttccatgttagctgtgtgtgtggcttcatcttgatggtttgggtttctcaatattac 178
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attttccatgtcagctgtgtgtgtggcttcatcttgatggtttgggtttctcaatattac 624

                                                                       
Query: 179 agaagaacatatgccctatggttcttaaactaacttcagaatgatgtcctaccttgccaa 238
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaagaacatatgccctatcgttcttaaactaacttcagaatgatgtcctaccttgccaa 564

                                                                       
Query: 239 tagtcacagtttaagttgaatgtatttggaggctgagcatggagaatctagactaagaac 298
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagtcacagcttaagttgaatgtatttggaggctgagcatggagaatctagactaagaac 504

                                                                       
Query: 299 aaaaatctgtgtaaaatgatgggaatttaatggaataagatatctcaaatacctttgctt 358
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 503 aaaaatctgtgtaaaatgatgggaatttaatggaataaaatatctcaaatacctttgctt 444

                                                                       
Query: 359 tttcatttactctcaaagtcaactgggcacctgctctgcattaatattcttggatacata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttcatttactctcaaagtcaactgggcacctgctctgcattaatattcttggatacata 384

                                                                       
Query: 419 ccttcttattaaagagaaagaaacatatcaagaggaagtttgaatgtgagtccacgctac 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 383 ccttcttattaaagagaaagaaacatatcaagaggaagtttgaatgtgagtccatgctac 324

                                                                       
Query: 479 ctctggtccatatctcaaatccttcaactgactgggacagagtgctctgagaaaataacc 538
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 ctctggtccatatctcaaatccttcaactgactaggacagagtgctctgagaaaataacc 264

                                                                       
Query: 539 atggacatgggattccttttgagtaggatgaaggatctgtaggataggctttatgatctt 598
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 263 atggacatgggattccttttgagtaggaagaaggatctgtaggataggctttatgatctt 204

              
Query: 599 cat 601
           |||
Sbjct: 203 cat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1003
Length adjustment: 10
Effective length of query: 591
Effective length of database: 993
Effective search space:   586863
Effective search space used:   586863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |