Query= MSMg01no135_l23.b1 MSMg01no135_l23.b1 CHROMAT_FILE:
MSMg01no135_l23.b1 PHD_FILE: MSMg01no135_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:56 2005
(670 letters)
>mm_chr3_71693577_71694648
Length = 1072
Score = 1067 bits (552), Expect = 0.0
Identities = 640/670 (95%), Gaps = 6/670 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaataaagtcctaaaatgttcaaatgttccaaagaattataagatcaaattaa 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaataaagttttaaaatgttcaaatgttccaaagaattataagatcaaattaa 263
Query: 64 accaagtgattaacactctgaggacagcattttgctttataagtaggcgtctgcaggtgg 123
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct: 264 accaagtgattaacactctgaggacaacgttttgctttataagtaggagtctgcaggtgg 323
Query: 124 aggactgtgttggaagaatgctctattttataaggctgcttcttctttctgcacaaaaca 183
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 324 aggactgtgttggaagaatgctctattttataagactgctccttctttctgcacaaaaca 383
Query: 184 gttctcctgagtgacagaacctcagctctgggaccagaacaattgaaatagattattttg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attctcctgagtgacagaacctcagctctgggaccagaacaattgaaatagattattttg 443
Query: 244 tcaatatgtttttctaagcattttgattattgttttatggagtataataaagcatgcaac 303
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 444 tcaatatgtttttctaagcattttgattattgttttatggaatataataaaacatgcaac 503
Query: 304 atactaatatgctgcaatacaaacatttataactcacatgttcaattgatca--aataac 361
||||||||||||||| ||||||||||| |||| ||||||||| ||||||||| ||||||
Sbjct: 504 atactaatatgctgcgatacaaacattgataattcacatgtttaattgatcacaaataac 563
Query: 362 -aagaaatgtaatgacattggttacattgctctgcataacataaatgtcagataatcatt 420
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caa-aaatgtaatggcattggttacattgctctgcataacataaatgtcagataatcatt 622
Query: 421 gtttgttaattttgtagagtgtgcaaacatatcttaaaacattttttgagtatctttcca 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtttgttgattttgtagagtgtgcaaacatatcttaaaacattttttgagtatctttcca 682
Query: 481 aatcctaaaataatttt-cttggtaaagcttaccctatagattttaactttaaaatttta 539
||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||| |||
Sbjct: 683 aatcctaaa-taatttttcttagtaaagcttaccctatagattttaacttaaaaatgtta 741
Query: 540 ataatgcaaaatattgtggcataacacttatttaagttgtcaatctttcagcctaaattt 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ataatgcaaaatattatggcataacacttatttaagttgtcaatctttcagcctaaattt 801
Query: 600 gacctattacttaacatagataccatttataagccattatgaatataacgctaataatat 659
||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 802 gacctattagttaacatagatataatttataagccattgtgaatataacgctaataatat 861
Query: 660 tactttcact 669
||||||||||
Sbjct: 862 tactttcact 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1072
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1062
Effective search space: 700920
Effective search space used: 700920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_l23.g1 MSMg01no135_l23.g1 CHROMAT_FILE:
MSMg01no135_l23.g1 PHD_FILE: MSMg01no135_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:57 2005
(657 letters)
>mm_chr3_71781003_71782059
Length = 1057
Score = 1170 bits (605), Expect = 0.0
Identities = 644/657 (98%)
Strand = Plus / Minus
Query: 1 atggcagttttaagacagtacggaacacagatttaaactagcttcattttttttttcagg 60
||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 683 atggcagttttaacacagtatggaccacagatttaaactagcttcattttttttttcagg 624
Query: 61 aaatttaactaacatttaagcaagagaacaaaacactggaatattagaggagacagttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaatttaactaacatttaagcaagagaacaaaacactggaatattagaggagacagttca 564
Query: 121 taatttataaatttgagtctgatacaacatccagtaatctatttctaagaaattgaaagg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 563 taatttataaatttgagtctgatacaacatccagtaatctatttctaagaaattgaaaag 504
Query: 181 aaaatcaatatgaattatttttagtagcattccttacatgacacaataagagttgggtat 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 503 aaaatcaatatgaattatttttagtagctttccttacatgacacaataagagttgggtat 444
Query: 241 aataggacatacatgtagttcaaagcacccagtagataaaatcacgtgagtaaatcaatt 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 aataggacatacatgtagttcaaagcacccagaagataaaatcacgtgagtaaatcaatt 384
Query: 301 gaattaaagaagatgtgaacagagtacttaagggagcaagattcagccaataaccaacca 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 383 gaattaaagaagatgtgaacagagtacttaagggagcaagattcagctaataaccaacca 324
Query: 361 agcaatcaaacaaataatgagattgaaaaacacaaaagaaaacccataacttttgtggcc 420
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 323 agcaatcaaacaaataatgaaattgaaaaacacaaaagaaaacccacaacttttgtggcc 264
Query: 421 atgtgtgtttggtcctggagttgggagagtacatatgcacatattttagtcaataaatgg 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgtgtgtttggtcctggggttgggagagtacatatgcacatattttagtcaataaatgg 204
Query: 481 aaagaatctattttattcttctaccacatgggtccaggagatgaatctcatgcagtcagg 540
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 aaagaatctattctattcttctaccacatgggtccagtagatgaatctcatgcagtcagg 144
Query: 541 cttctgtctatatgtgcttaatcacattcctggtctccagagacttctcgcaggtatgaa 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 143 cttctgtctatatgtgcttaatcacattcctagtctccagagacttctcgcaggtatgaa 84
Query: 601 ggtactctatatctttgctaccatggtcatggccattgattttattgactggatttt 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 ggtactctatatctttgctaccatggtcatggccattgattttattgactggatttt 27
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
