Query= MSMg01no135_n23.b1 MSMg01no135_n23.b1 CHROMAT_FILE:
MSMg01no135_n23.b1 PHD_FILE: MSMg01no135_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:05 2005
(603 letters)
>mm_chr3_30179294_30180296
Length = 1003
Score = 1091 bits (564), Expect = 0.0
Identities = 591/600 (98%), Gaps = 1/600 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtctgatcccaaaac-caactttctgtaggagctgtcatctgggggaaatgtg 63
||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagtttgagcagaaaacacaactttctgtaggagctgtcatctgggggaaatgtg 263
Query: 64 cctatcttattcttcatcacaagtccagaggccagcagactggttggcacatagcacaca 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 264 cctatcttattcttcatcacaagtccagagaccagcagactggttggcacatagcacaca 323
Query: 124 ttcaacgaatacttgttgtttgaatgttgcaaggatgatggatgagtatcatgttttgaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcaacgaatacttgttgtttgaatgttgcaaggatgatggatgagtatcatgttttgaa 383
Query: 184 tcagacaaaacatcaaatttatggggagggaatatcttgaaattcagctctagacaaacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcagacaaaacatcaaatttatggggagggaatatcttgaaattcagctctagacaaacc 443
Query: 244 ttaaatcatacaactccagtagccgggtgaagtagcaggcgtaatggaactggaagattt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaaatcatacaactccagtagccgggtgaagtagcaggcgtaatggaactggaagattt 503
Query: 304 gagttctgagtccttccatacttactagttgcgtaatggacagtgtatctgcctgtcact 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 504 gagttctgagtccttccatacttactagttgggtaatggacagtgtatctgcctgtcact 563
Query: 364 aatggctctgaggctgtgcatcattactggtctgaactaggtcagtgaccccagcacttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatggctctgaggctgtgcatcattactggtctgaactaggtcagtgaccccagcacttc 623
Query: 424 tgaacatttgtggatgattgtacagatcaaataagacagtatacattctagttccaacag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgaacatttgtggatgattgtacagatcaaataagacagtatacattctagttccaacag 683
Query: 484 ccaacttgtggaaccaatattggtgtgcaaatacagagcaatgggtaaaaaaatacatat 543
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 684 ccaagttgtggaaccaatattggtgtacaaatacagagcaatgggtaaaaaaatacatat 743
Query: 544 atatgtatgtatatatatgcaataaagtatatattctatatattacatatattcatgcaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atatgtatgtatatatatgcaataaagtatatattctatatattacatatattcatgcaa 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_n23.g1 MSMg01no135_n23.g1 CHROMAT_FILE:
MSMg01no135_n23.g1 PHD_FILE: MSMg01no135_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:05 2005
(520 letters)
>mm_chr3_30329486_30330408
Length = 923
Score = 874 bits (452), Expect = 0.0
Identities = 506/530 (95%), Gaps = 13/530 (2%)
Strand = Plus / Minus
Query: 1 taagacataggctttccatcctgtgacactggataaaaccaggccatttgaagcaacagg 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 taagacacaggctttccatcctgtgacactggataaaaccaggccatttgaagcaacagg 651
Query: 61 agaaatggaagtgtaagcttctgtagacttagatggtaagagtcccactgtatcatgac- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 agaaatggaagtgtaagcttctgtagacttagatggtaagagtcccactgtatcatgaca 591
Query: 120 -agagagagacaagtgtgcttgcatagttatctggtgaaggttgtgcctaaactgggcat 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gagagagagacaagtgtgcttgcatagttatctggtgaaggttgtgcctaaactgggcat 531
Query: 179 cagaggattcggtgaacaatggagcaggggcaatgggcacccagtggggagaagaagcat 238
|||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 530 cagaggattcagtgagcaatggagcaggggcaatgggcacccagtggggagaggaagcat 471
Query: 239 tcgagaagagaggaggagcacaaaggacaagaagagtgggaagagatagaggccttctga 298
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tcaagaagagagaaggagcacaaaggacaagaagagtgggaagagatagaggccttctga 411
Query: 299 ggaagtgcaagccagactgttggccaactaggctgccactgctggtggacactgtgagag 358
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 410 ggaagtgcaagccagactgttggccaactaggctgccactgc---tggacactgtgagag 354
Query: 359 ccttctggaccctg----agcatgttcaccctccggagctgtggtagcacagggcttgtg 414
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 353 ccttctggaccctgagccagcatgttcaccctccgaagctgtggtagcacagggctcgtg 294
Query: 415 ccttgtagtttgctggtgagccagcaggcttctgtcaacagacgcttcctggcatgattg 474
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 293 ccttgtagtttgctggtgagccagcaggcttctgtgaacagaagcttcctggcatgattg 234
Query: 475 ggttagtgttctgtttgtgtttttagtg----gtttggtgttgacttgag 520
||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 233 ggttagtgttctgtttgtgttttaagtggtttgtttggtgttgacttgag 184
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 923
Length adjustment: 10
Effective length of query: 510
Effective length of database: 913
Effective search space: 465630
Effective search space used: 465630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
