Query= MSMg01no136_b21.b1 MSMg01no136_b21.b1 CHROMAT_FILE:
MSMg01no136_b21.b1 PHD_FILE: MSMg01no136_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:24 2005
(390 letters)
>mm_chr3_13679638_13680428
Length = 791
Score = 615 bits (318), Expect = e-180
Identities = 363/378 (96%), Gaps = 3/378 (0%)
Strand = Plus / Plus
Query: 1 gtgatattttgatagaaaattgtatactactac-aaaaaacttttttaaaatgtgtatta 59
||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||
Sbjct: 201 gtgatattttgatagaaaaatgtatactactgcaaaaaaacttttaaaaaatgtgtatta 260
Query: 60 attgacttgattgtgtaatataagtcataatagttgaaacgtaactactaataacataat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgacttgattgtgtaatataagtcataatagttgaaacgtaactactaataacataat 320
Query: 120 ttttaaatttaac-aaaaacatgaattttttttactaccattttacagttttgagatcaa 178
||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 321 ttttaaatttaacaaaaaacatgaa-tttttttaataccattttacagttttgagctcaa 379
Query: 179 ggcaaatgacctgtgtagaaccctgtttagcatttcaataaagctctaaggagtagatgt 238
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 380 ggcaaatgacctgtgtagaaccttgtttagcatttcaataaagctctatggagtagatgt 439
Query: 239 cactttcattgcaaggtaaatacactaaaggaaattgctgaggaaacctgagtcagaatt 298
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caatttcattgcgaggtaaatacactaaaggaaattgctgaggaaacctgagtcagaatt 499
Query: 299 catagccatgtcagatgctgcagctaggaactcaaaactttagtattacacctgtgtgtg 358
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 500 catagccatgtcagatgctgcagctaggaactcaaaactttagtattatacttgtgtgtg 559
Query: 359 tgtgtgtgtgtgtgtgtg 376
||||||||||||||||||
Sbjct: 560 tgtgtgtgtgtgtgtgtg 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 791
Length adjustment: 9
Effective length of query: 381
Effective length of database: 782
Effective search space: 297942
Effective search space used: 297942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_b21.g1 MSMg01no136_b21.g1 CHROMAT_FILE:
MSMg01no136_b21.g1 PHD_FILE: MSMg01no136_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:24 2005
(634 letters)
>mm_chr3_13840864_13841898
Length = 1035
Score = 1189 bits (615), Expect = 0.0
Identities = 630/635 (99%), Gaps = 1/635 (0%)
Strand = Plus / Minus
Query: 1 caggcatgtatatgttctcatgttttctgaaattaaatataaatacttaactatgaaatt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 835 caggcatgtatatgttctcatgttttctgaaattaaatataaatacttcactatgaaatt 776
Query: 61 gaattttctttgtgaaaatcaatatgaatattttaaaatgtctttctatactcacaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gaattttctttgtgaaaatcaatatgaatattttaaaatgtctttctatactcacaatct 716
Query: 121 ttctacactattgtttggtgcttatttctgggattatgtttgtttttcttggatatagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttctacactattgtttggtgcttatttctgggattatgtttgtttttcttggatatagca 656
Query: 181 gaaaataacacaaatctcatgctttatatatatgttcttgttctcattcatccccaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaaaataacacaaatctcatgctttatatatatgttcttgttctcattcatccccaaaat 596
Query: 241 taaaatagtg-tttttttttaaccagaaagtagttgattggtgaaaagtgaaccaatttt 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 taaaatagtgttttttttttaaccagaaagtagttgattggtgaaaagtgaaccaatttt 536
Query: 300 tccttataataaatgattttattatcaaatacattattcctcacaccaacgtatagaata 359
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 535 tccttataataaatgattttattatcaaatacattattcctcatagtaacgtatagaata 476
Query: 360 aaaatgtgacactttacttcctaatattaatgactgaataaaccattgtagatgttctca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaaatgtgacactttacttcctaatattaatgactgaataaaccattgtagatgttctca 416
Query: 420 ctgcttttaaattaagaaaaagtatgatagagtaatcaatgattctatatataatgtttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctgcttttaaattaagaaaaagtatgatagagtaatcaatgattctatatataatgtttc 356
Query: 480 ctttctaaagttggaaggtaatcaacactgcagttggcttcaattattagctttctgaag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctttctaaagttggaaggtaatcaacactgcagttggcttcaattattagctttctgaag 296
Query: 540 caacagctagacttaggcagctgaaatcactcatccagatcttcagaaagtacagtgaga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 caacagctagacttaggcagctgaaatcactcatccagatcttcagaaagtacagtgaga 236
Query: 600 aaaaaaaaatccctgcctaacccggccctgattag 634
|||||||||||||||||||||||||||||||||||
Sbjct: 235 aaaaaaaaatccctgcctaacccggccctgattag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space: 639600
Effective search space used: 639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
