Query= MSMg01no136_f24.b1 MSMg01no136_f24.b1 CHROMAT_FILE:
MSMg01no136_f24.b1 PHD_FILE: MSMg01no136_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:44 2005
(349 letters)
>mm_chr3_45220130_45220881
Length = 752
Score = 634 bits (328), Expect = 0.0
Identities = 345/352 (98%), Gaps = 3/352 (0%)
Strand = Plus / Minus
Query: 1 ctgacgttcttagttccctgacgtccttctgtatatacacagcatgatcaaagcatcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctgacgttcttagttccctgacgtccttctgtatatacacagcatgatcaaagcatcctt 493
Query: 61 ggagaacttctcttttaggttttcatttctcaaatgtatttttaaaagctgtacatcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggagaacttctcttttaggttttcatttctcaaatgtatttttaaaagctgtacatcagt 433
Query: 121 atgtgcaatgaatcagttgcctgacattggataaaggctttctctttgctgtgatcaaaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 432 atgtgcaatgaatcagttgcctgacattggataaaggctctctctttgctgtgatcaaaa 373
Query: 181 gaattaaggaactgtttgtgcttctttcacactctattttttaaatgcatttttattttt 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaatgaaggaactgtttgtgcttctttcacactctattttttaaatgcatttttattttt 313
Query: 241 cttggtgagtcacagaaacatttcatttttcacatttatcttgacatctgaagtagagat 300
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 312 cttggtgagtcacagaaacatttcatttttcacacttatcttgacatttgaagtagagat 253
Query: 301 gaaaaagtattctggagaagaaatattcaaatat---ctgttagaacttatc 349
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 252 gaaaaagtattctggagaagaaatattcaaatatctactgttagaacttatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 752
Length adjustment: 9
Effective length of query: 340
Effective length of database: 743
Effective search space: 252620
Effective search space used: 252620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_f24.g1 MSMg01no136_f24.g1 CHROMAT_FILE:
MSMg01no136_f24.g1 PHD_FILE: MSMg01no136_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:44 2005
(620 letters)
>mm_chr3_45077022_45078042
Length = 1021
Score = 1131 bits (585), Expect = 0.0
Identities = 612/621 (98%), Gaps = 1/621 (0%)
Strand = Plus / Plus
Query: 1 cagaaaagatcttgattacaactcaaaacatctgtgtcacatatctggggacttatgtgt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaaagatcttgattacaactcaaagcatctgtgtcacatatctggggacttatgtgt 260
Query: 61 catctaaaagttcacttgttgatattattgttaaattcaatggcaaaatttcagctctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 catctaaaagttcacttgttgatattattgttaaattcaatggcaaaatttcagctcgag 320
Query: 121 ggttagaccattttcaactctttatttaactttaatatttttgatgctgaagagcttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttagaccattttcaactctttatttaactttaatatttttgatgctgaagagcttgct 380
Query: 181 atgttgcagtacatgccacacactttctcagctatgaactacagatgcagcccaattttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttgcagtacatgccacacactttctcagctatgaactacagatgcagcccaattttc 440
Query: 241 acttatgtaaaatctaaaagctctgatttattactaactctattagctgtattcataaag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 acttatgtaaaatctaaaagctctgatttattactaactctattagctgtattcgtaaag 500
Query: 301 ttttacatgatgaatttaattattttgataaacatactgaaccggcatatgttggcctat 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 501 ttttacatgatgaatttaattattttgataaacatactgaattggcatatgttggtctat 560
Query: 361 ttatttaagaggttaatcattcccatttttagtttcttaccccaagttttgctttaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatttaagaggttaatcattcccatttttagtttcttaccccaagttttgctttaacaa 620
Query: 421 gtgcaaacattataaaaaatataaacattaataagtgcaaatattataaatatattctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgcaaacattataaaaaatataaacattaataagtgcaaatattataaatatattctat 680
Query: 481 actgtgattctataatctaaatagatgtaacataatttatttattgccagcaaat-gttc 539
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 681 actgtgattctataatctaaatacatgtaacataatttatttattgccagcaaaaagttc 740
Query: 540 ttttatttaaaataaatgtaatagtcagtgccatacccaaatattttccaaattatttaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttatttaaaataaatgtaatagtcagtgccatacccaaatattttccaaattatttaa 800
Query: 600 catctatttgcatatatatta 620
|||||||||||||||||||||
Sbjct: 801 catctatttgcatatatatta 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1021
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1011
Effective search space: 616710
Effective search space used: 616710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
