BAC Information

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BAC

Clone NameMSMg01-136I22
Chromosome3 (Build37)
Map Location 77,644,600 - 77,806,176
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136I22.T7 (MSMg01no136_i22.b1)MSMg01-136I22.TJ (MSMg01no136_i22.g1)
ACCAG342725AG342726
length694692
length of high quality
(start - end)		644 (51 - 694)614 (79 - 692)
definitionCHROMAT_FILE: MSMg01no136_i22.b1 PHD_FILE: MSMg01no136_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:59 2005CHROMAT_FILE: MSMg01no136_i22.g1 PHD_FILE: MSMg01no136_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,644,600 - 77,645,238)(77,805,564 - 77,806,176)
sequence
CCCCNAAATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGATTCTCCATTTAGTTCTGTCCCATATTTTTAAATTGGATTATTTG
GTTTACTGGTGTCTAACTTCTTGAGTTCATTATACATTTTGGATATTAGC
ACTCTGTTGTATGTAGGGTTAAAGAAGATCTTTCCCAATCTGTAGGTTGG
GGTTAGGTCCTGTTGACAGTGCCGTTTGCCTTACTGAACCGCTTCAGCTT
CATGAGGTCCTATTTATCAATTTTTGATCCTAGTGCTTGAGCCATTGATG
TTTTGTTCAGGAATTTGTCTCCTGTCCCAATGTGTTCAAGGCGTTTCCCT
ACTTTCTCTTCTATTAGATTTATTGTATCCAGTTTTATGTTGAAGATTTT
GATCAACTTGGACTTGAGTTTTGCGCAGGTGATAAATATAATTTTATTTG
CATTTTTCTGCATGCAGTCCTCCAGTTAGACCAGCATCATTATTGAAGAT
GCTTAATTTTTTTCATTGCATGATATAAATACCAAAGACTATTATGCAAA
TACTTTGGACTTGATGATTTCACAATAATTTATAGAATTGTCTGGAAGAA
CTATTTATATGTAGTATATTTTTTCCAGAGACTAAATTTCTAAAGGTTTG
ACTGATTGTTCCTAACATCTCTATCTAAGTGAGGTTTGCTGTGA

AAAAANNACCATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATATATTAAGATTTTTGAG
AGCAGAATATTTAGATTCTGATAGCCAATGTCACTTTTTGGTATGCAAAT
TTCCTTATAAAAACACTCATGATTTTAATCTCCCCAATTCAGTCTCCTCT
GCCCAGTGGAAAAAAAGAAACTACTATCAGCAGAAATTTCTAAGATATGA
ATGTGGCATTTTGAAAGCTCTGTAGTTCCTGATCTAGTTGTAATTGATAC
TCTGTGAAACTAAAGGTCACTATTTGTGTTCTAAATAGTAGAAACTATCT
TTTATAAAATGTAAGGCACAATAAATTAAGTCCAAAGTAGCATTTCTAAT
TTGCTGCCTAAGATAATAAAATATGAGTCAAGTGTGGAAAGCAGCTATAC
ATTGACCTTGTATGGTATGCAGCACAGGGATGTGCAGTTCACACTGTGAT
CTTTGGGATAATTGCTTGTACAGGACTGATATCCCCACCTTTACATATGT
CTATGAAATTCACACCTTTAGGTGTCAGTCTGCAATTTCCTCAGGAGATA
CTCTTTTCTCAATTTTTAAAATCTTAAACCAACAGGCAAGTTCTAGCTTT
AACCTGAAATTCCACTATCATTGATCATCTAAGACTTCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_i22.b1 MSMg01no136_i22.b1 CHROMAT_FILE:
MSMg01no136_i22.b1 PHD_FILE: MSMg01no136_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:59 2005
         (644 letters)



>mm_chr3_77644395_77645438
          Length = 1044

 Score = 1166 bits (603), Expect = 0.0
 Identities = 630/639 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   attctccatttagttctgtcccatatttttaaattggattatttggtttactggtgtcta 65
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 attctccatttagttctgtgccatatttttaaattggattatttggtttactggtgtcta 265

                                                                       
Query: 66  acttcttgagttcattatacattttggatattagcactctgttgtatgtagggttaaaga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acttcttgagttcattatacattttggatattagcactctgttgtatgtagggttaaaga 325

                                                                       
Query: 126 agatctttcccaatctgtaggttggggttaggtcctgttgacagtgccgtttgccttact 185
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 326 agatctttcccaatctgtaggttggggttaggtcctgttgacagtgccatttgccttact 385

                                                                       
Query: 186 gaaccgcttcagcttcatgaggtcctatttatcaatttttgatcctagtgcttgagccat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaaccgcttcagcttcatgaggtcctatttatcaatttttgatcctagtgcttgagccat 445

                                                                       
Query: 246 tgatgttttgttcaggaatttgtctcctgtcccaatgtgttcaaggcgtttccctacttt 305
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 tgatgttttgttcaggaatttgtctcctgtcccaatgtgttcaaggcttttccctacttt 505

                                                                       
Query: 306 ctcttctattagatttattgtatccagttttatgttgaagattttgatcaacttggactt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctcttctattagatttattgtatccagttttatgttgaagattttgatcaacttggactt 565

                                                                       
Query: 366 gagttttgcgcaggtgataaatataattttatttgcatttttctgcatgcagtcctccag 425
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gagttttgtgcaggtgataaatataattttatttgcatttttctgcatgcagtcctccag 625

                                                                       
Query: 426 ttagaccagcatcattattgaagatgcttaatttttttcattgcatgatataaataccaa 485
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 626 ttagaccagcagcattattgaagatgcttaatttttttcattgcatgatataattaccaa 685

                                                                       
Query: 486 agactattatgcaaatactttggacttgatgatttcacaataatttatagaattgtctgg 545
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agactcttatgcaaatactttggacttgatgatttcacaataatttatagaattgtctgg 745

                                                                       
Query: 546 aagaactatttatatgtagtatattttttccagagactaaatttctaaaggtttgactga 605
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 746 aagaactatttatatgtagtatattttttccagagactaaatttctagaggtttgactga 805

                                                  
Query: 606 ttgttcctaacatctctatctaagtgaggtttgctgtga 644
           ||||||||||| |||||||||||||||||||||||||||
Sbjct: 806 ttgttcctaacttctctatctaagtgaggtttgctgtga 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_i22.g1 MSMg01no136_i22.g1 CHROMAT_FILE:
MSMg01no136_i22.g1 PHD_FILE: MSMg01no136_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:59 2005
         (614 letters)



>mm_chr3_77805363_77806376
          Length = 1014

 Score = 1162 bits (601), Expect = 0.0
 Identities = 610/613 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaatatattaagatttttgagagcagaatatttagattctgatagccaatgtcacttttt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aaatatattaagatttttgagagcagaatatttagattctgatagccaatgtcacttttt 755

                                                                       
Query: 62  ggtatgcaaatttccttataaaaacactcatgattttaatctccccaattcagtctcctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ggtatgcaaatttccttataaaaacactcatgattttaatctccccaattcagtctcctc 695

                                                                       
Query: 122 tgcccagtggaaaaaaagaaactactatcagcagaaatttctaagatatgaatgtggcat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tgcccagtggaaaaaaagaaactactatcagcagaaatttctaagatatgaatgtggcat 635

                                                                       
Query: 182 tttgaaagctctgtagttcctgatctagttgtaattgatactctgtgaaactaaaggtca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tttgaaagctctgtagttcctgatctagttgtaattgatactctgtgaaactaaaggtca 575

                                                                       
Query: 242 ctatttgtgttctaaatagtagaaactatcttttataaaatgtaaggcacaataaattaa 301
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttatttgtgttctaaatagtagaaactatcttttataaaatgtaaggcacaataaattaa 515

                                                                       
Query: 302 gtccaaagtagcatttctaatttgctgcctaagataataaaatatgagtcaagtgtggaa 361
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 514 gtccaaagtagcatttctaatttgctacctaagataataaaatatgagtcaagtgtggaa 455

                                                                       
Query: 362 agcagctatacattgaccttgtatggtatgcagcacagggatgtgcagttcacactgtga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agcagctatacattgaccttgtatggtatgcagcacagggatgtgcagttcacactgtga 395

                                                                       
Query: 422 tctttgggataattgcttgtacaggactgatatccccacctttacatatgtctatgaaat 481
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 394 tctttgggataattgcttgtacaggcctgatatccccacctttacatatgtctatgaaat 335

                                                                       
Query: 482 tcacacctttaggtgtcagtctgcaatttcctcaggagatactcttttctcaatttttaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcacacctttaggtgtcagtctgcaatttcctcaggagatactcttttctcaatttttaa 275

                                                                       
Query: 542 aatcttaaaccaacaggcaagttctagctttaacctgaaattccactatcattgatcatc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aatcttaaaccaacaggcaagttctagctttaacctgaaattccactatcattgatcatc 215

                        
Query: 602 taagacttctcaa 614
           |||||||||||||
Sbjct: 214 taagacttctcaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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