Query= MSMg01no137_i04.b1 MSMg01no137_i04.b1 CHROMAT_FILE:
MSMg01no137_i04.b1 PHD_FILE: MSMg01no137_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:13 2005
(289 letters)
>mm_chr3_81630961_81631649
Length = 689
Score = 543 bits (281), Expect = e-159
Identities = 287/289 (99%)
Strand = Plus / Plus
Query: 1 aaactgatatttatgtcaaatacagaaagtatcagaagatagtttattaagaatcagaat 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 aaactgatatttatgtcaaatacagaaagtaccagaagatagtttattaagaatcagaat 260
Query: 61 attactaaatattaaaagccacttatgcttcattcttctgagagatgaaacaaaaatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attactaaatattaaaagccacttatgcttcattcttctgagagatgaaacaaaaatcaa 320
Query: 121 cagatcatcctgatgcatgccgaagtcatctgacatagactacaaatgtattattatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagatcatcctgatgcatgccgaagtcatctgacatagactacaaatgtattattatttc 380
Query: 181 aaacacccaatacatgacatcagaatggttaccacctctctgtatgtaaaacataaatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacacccaatacatgacatcagaatggttaccacctctctgtatgtaaaacataaatac 440
Query: 241 acatacagccatataatctgtactgtagtattcttgttctatgggaagc 289
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 acatacagccatataatctgtacagtagtattcttgttctatgggaagc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no137_i04.g1 MSMg01no137_i04.g1 CHROMAT_FILE:
MSMg01no137_i04.g1 PHD_FILE: MSMg01no137_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:13 2005
(239 letters)
>mm_chr3_81776049_81776686
Length = 638
Score = 426 bits (220), Expect = e-124
Identities = 232/236 (98%), Gaps = 1/236 (0%)
Strand = Plus / Minus
Query: 4 ggcttaagggggccttgagctgaagcaggaattctcagactggttgattcacttagaaga 63
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 365 ggcttaagggggccttgagctgaagcaggaattctcagactggttgactcacttagaaga 306
Query: 64 caggggcctttgaactcataatgtgactagcatgagactttagagagctgtctgctcttt 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 305 caggggcctttgaactcataatgtgactagcatgagacttcagagagctgtctgctcttt 246
Query: 124 cttctggtttgagaccacaggcccccagaattgttcaaataaagccggagagatagctca 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cttctggtttgagaccacagg-ccccagaattgttcaaataaagccggagagatagctca 187
Query: 184 tcagttaagagcactgactgctcttccagaggtcctgagttcaattcccagcagcc 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gcagttaagagcactgactgctcttccagaggtcctgagttcaattcccagcagcc 131
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space: 144670
Effective search space used: 144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
