BAC Information

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BAC

Clone NameMSMg01-137M10
Chromosome3 (Build37)
Map Location 49,491,536 - 49,599,764
singlet/doubletdoublet
Overlap genePcdh18
Upstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137M10.T7 (MSMg01no137_m10.b1)MSMg01-137M10.TJ (MSMg01no137_m10.g1)
ACCAG343615AG343616
length732730
length of high quality
(start - end)
273 (46 - 318)400 (72 - 471)
definitionCHROMAT_FILE: MSMg01no137_m10.b1 PHD_FILE: MSMg01no137_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:35 2005CHROMAT_FILE: MSMg01no137_m10.g1 PHD_FILE: MSMg01no137_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,491,536 - 49,491,787)(49,599,366 - 49,599,764)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCCTCCTCTTTCCTATGAGTCATCCCCAACACCTTAGCTCAACCAATA
ATGTACACTCACCCTGAAAGCTTCTATGAACTCCCGAAGATTTAAATACC
CATTATTCCCCACAAATAAAGGAGCTGGCCAATGAAGCCTGCCTCCAGAG
AGCAGTTGTTATGCTTACCTGTCTGTCTCTTGAGGTCTCCATCACCCCTG
GTTGTTCATACCTTGCTTTCCCTATGAGGCCACTGGTCTGATCTCAGGCA
ATCATGCCATTAAGGGAGTGTTTTACATAGTGAGAACAACACTTGCCAAG
TAGTCAGCACCTACTAAATGCTAGGCTTCAGTGCTGTTACCATAGAAACG
ATGGCAGAAAATTGGCCATTAGTTTGACTGTCTACACATTCCCTTGAAAT
ATTTTTAAAACACTTTGAGGTATTAGCTACTTATTTTACTCTTAAAAGTT
GCCAGTTAATGGCCACAATTTCTTTCAATACTAAAAATACAGAATGATCA
GGACTTTCTTCTCATGTGACTATACCTGTCCTACATAAACAAAGTTGTTC
TTTAACTATTTTGAAATTTGCTTTAACAAGAATGACTTCATCTCAAACCA
TATGCCAAAGGTCATCCTAGATATTGCAAAAAAAATATTAAAAAAATTTG
TCCCCCTCATATAGATTTTAAAGACTGTTTTT
AATACAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGATCGCCATTCCAGGTACAGCACCACC
CACACTGGGCTGGGTGCTCCCTCCATCAAGCACTATTAAGAAAATGCCTT
TCAGCCTTGCCTATAGGCTGATCTTATGGAAACATTGTTTTAATTGAGAT
TGCTTCCTTTTAAATGGCTGTGGCTTACATCATGGTGAAATAAACTATCC
AAGACATTATGGAAATAGTATATCAATAAAAACGAGGGACAGAGCTGATG
GAAAGTGTTGAGGAAGATTTTGTGCTTTATGTGGACAGGTTGGACTCTCT
ACTTAAGCAAGTAATACAAACTATACAGACGCTTATCGGAGTGGGATTCA
GAAGTGAGAAGTTCTTTGTAGAAATGCTTGGTGCCTAGGTAACACATGAT
TGATTCTTCCAGAGATTTCACAGTGCTTCAGCATAACCTATACTTTTATT
TCTTTTTTTAAAAAAACTACCCAATGTGGTCTAAGACACGTTTTCCTTTT
AAGCTGGCTGGCTTAACAAGTACAATCCCTAGGTTTGAGCTCCAGTATCA
CACACAAATTTCCAATAGCATTCTGTGTCAATCATAAATGCTTATTTACA
AATAGGAATTCCGTGGTAGGAGGCCAAAGACAGAATAATTATTTCCGAGG
AAAGTGAACTGAACTAAAGGAACCTCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_m10.b1 MSMg01no137_m10.b1 CHROMAT_FILE:
MSMg01no137_m10.b1 PHD_FILE: MSMg01no137_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:35 2005
         (273 letters)



>mm_chr3_49491315_49491987
          Length = 673

 Score =  487 bits (252), Expect = e-142
 Identities = 252/252 (100%)
 Strand = Plus / Plus

                                                                       
Query: 22  atgagtcatccccaacaccttagctcaaccaataatgtacactcaccctgaaagcttcta 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atgagtcatccccaacaccttagctcaaccaataatgtacactcaccctgaaagcttcta 281

                                                                       
Query: 82  tgaactcccgaagatttaaatacccattattccccacaaataaaggagctggccaatgaa 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgaactcccgaagatttaaatacccattattccccacaaataaaggagctggccaatgaa 341

                                                                       
Query: 142 gcctgcctccagagagcagttgttatgcttacctgtctgtctcttgaggtctccatcacc 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gcctgcctccagagagcagttgttatgcttacctgtctgtctcttgaggtctccatcacc 401

                                                                       
Query: 202 cctggttgttcataccttgctttccctatgaggccactggtctgatctcaggcaatcatg 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cctggttgttcataccttgctttccctatgaggccactggtctgatctcaggcaatcatg 461

                       
Query: 262 ccattaagggag 273
           ||||||||||||
Sbjct: 462 ccattaagggag 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no137_m10.g1 MSMg01no137_m10.g1 CHROMAT_FILE:
MSMg01no137_m10.g1 PHD_FILE: MSMg01no137_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:36 2005
         (400 letters)



>mm_chr3_49598981_49599780
          Length = 800

 Score =  764 bits (395), Expect = 0.0
 Identities = 398/399 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatcgccattccaggtacagcaccacccacactgggctgggtgctccctccatcaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aggatcgccattccaggtacagcaccacccacactgggctgggtgctccctccatcaagc 725

                                                                       
Query: 61  actattaagaaaatgcctttcagccttgcctataggctgatcttatggaaacattgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 actattaagaaaatgcctttcagccttgcctataggctgatcttatggaaacattgtttt 665

                                                                       
Query: 121 aattgagattgcttccttttaaatggctgtggcttacatcatggtgaaataaactatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aattgagattgcttccttttaaatggctgtggcttacatcatggtgaaataaactatcca 605

                                                                       
Query: 181 agacattatggaaatagtatatcaataaaaacgagggacagagctgatggaaagtgttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agacattatggaaatagtatatcaataaaaacgagggacagagctgatggaaagtgttga 545

                                                                       
Query: 241 ggaagattttgtgctttatgtggacaggttggactctctacttaagcaagtaatacaaac 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggaagattttgggctttatgtggacaggttggactctctacttaagcaagtaatacaaac 485

                                                                       
Query: 301 tatacagacgcttatcggagtgggattcagaagtgagaagttctttgtagaaatgcttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tatacagacgcttatcggagtgggattcagaagtgagaagttctttgtagaaatgcttgg 425

                                                  
Query: 361 tgcctaggtaacacatgattgattcttccagagatttca 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgcctaggtaacacatgattgattcttccagagatttca 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)