BAC Information

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BAC

Clone NameMSMg01-137O07
Chromosome3 (Build37)
Map Location 145,387,985 - 145,578,176
singlet/doubletdoublet
Overlap geneDdah1, LOC100040331
Upstream geneLOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
Downstream geneBcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137O07.T7 (MSMg01no137_o07.b1)MSMg01-137O07.TJ (MSMg01no137_o07.g1)
ACCAG343701AG343702
length707707
length of high quality
(start - end)
136 (114 - 249)189 (75 - 263)
definitionCHROMAT_FILE: MSMg01no137_o07.b1 PHD_FILE: MSMg01no137_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:45 2005CHROMAT_FILE: MSMg01no137_o07.g1 PHD_FILE: MSMg01no137_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,387,985 - 145,388,120)(145,577,988 - 145,578,176)
sequence
TTTAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAGGATGC
GCGGAATTCCATGTTTTCTGGATAGAGCCTGGTACTAGAATCTGGTATTT
AGTGGTCCTGGTATATATGTCTGCCCAGTGGACAAGTAAGCTTTATAGAC
AACAACATCCTCATGATAAAGTTTCCATAATGAAATCCGTTTGATTTCAG
CTTTCTCAAGGCAGGGAACTCCTATTAAACAAAAGAGCTAATGTAAAGTT
GTTTGTTTGTTTGGCACGCTTAGTTTCTTATTTTAAAATGCATAGGATTC
TATACATATAAAAATGTTGTGTGTTTTCCCGTAGCACTTACATGAATCTT
TGTTCTATTAGAGCCACCACCAGGGGGAATCTATCTTCCGGTCAATAGTT
GTGGACAGTGAAAAACCGCGGTGTAGGGTAGCATGGCTAGAGGGCACGTG
GCACTGAGCATCCTAACAACTTATCCACCCACTGGTCATCTCTATAGCTC
TGCAGAGAGCCCTATGAAACAAGGTACGACAGGCCTGCTCATAAAGAACT
CATAAGATATCTACTGAGAACTTTTTCCTGCAGATCAAGTTTCAACCAGA
AGATTCCTGGCCCTGTAGCTTCAACCTTGCACAAAAAATGGCACCGATCA
ATATCCACAGTGACTCCAGTGATGCCATGGGAGACGCTGACCCATGAGGT
ATCATCA
NCCCCCGATGAAGTGGGAGGCCTGGCGGCCGCCTGGTCAAAACATGGAGG
TGAACTATAGAATTTCCTGCGGAATTCAATGCATGGGGACAGCTGACAGA
AGAAGGTGAGGACTTAGGGAAGAAATGTTCCAGAATCTTCTGTGAAGCAT
AATTTCAACTCTGTTACCTTAAAAAAAAAACTCAGAAGATCCATTCACGC
TTATCATTTTGTTGTGCAGATCTTTCAAGATAGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTATGTGTGTGTGCATGATATCTCAGATGGAACTTTGT
GGTGTCGTCTTCTGGATTCTCTTTTTTGCTCTCTCCTGTCTCTAATATTC
ATGTCTTTCATGTCAGCCCCGCACAGGGCAACTTGTCCTCCATCTTATAC
ACTCATGTCACTGCTTCCACTGGTTAATGACCAACTATTGTGGTCCATTC
CAGGGTGCCAGCACCACAAGTTCGCCTTGTTACATTTTAGTTAGGTTTAT
TATGCTAATAACTGGACTTGTCTTGCCTTTACTCTTTCATTCTTTTTTAT
TGTTTCTCTTTCGTTTAAAATACATGATTGCTCTAATTTCTAATTACTCC
TGCCACCACATTCCTAATTCTTTGTCTTTTTTATGAGGACTCTCTTCATC
TTTCGAGGTAGTCTCCTTCTTATCTCGTACCTCGCATACCTCTCTCCATC
CTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_o07.b1 MSMg01no137_o07.b1 CHROMAT_FILE:
MSMg01no137_o07.b1 PHD_FILE: MSMg01no137_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:45 2005
         (136 letters)



>mm_chr3_145387785_145388320
          Length = 536

 Score =  255 bits (132), Expect = 6e-73
 Identities = 135/136 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatgtctgcccagtggacaagtaagctttatagacaacaacatcctcatgataaagtt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatgtctgtccagtggacaagtaagctttatagacaacaacatcctcatgataaagtt 260

                                                                       
Query: 61  tccataatgaaatccgtttgatttcagctttctcaaggcagggaactcctattaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccataatgaaatccgtttgatttcagctttctcaaggcagggaactcctattaaacaaa 320

                           
Query: 121 agagctaatgtaaagt 136
           ||||||||||||||||
Sbjct: 321 agagctaatgtaaagt 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 536
Length adjustment: 8
Effective length of query: 128
Effective length of database: 528
Effective search space:    67584
Effective search space used:    67584
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no137_o07.g1 MSMg01no137_o07.g1 CHROMAT_FILE:
MSMg01no137_o07.g1 PHD_FILE: MSMg01no137_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:45 2005
         (189 letters)



>mm_chr3_145577819_145578407
          Length = 589

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaatgcatggggacagctgacagaagaaggtgaggacttagggaagaaatgttccaga 60
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttcagtgcatggggacagctgagagaagaaggtgaggacttagggaagaaatgttccaga 299

                                                                       
Query: 61  atcttctgtgaagcataatttcaactctgttaccttaaaaaaaaaactcagaagatccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atcttctgtgaagcataatttcaactctgttaccttaaaaaaaaaactcagaagatccat 239

                                                                       
Query: 121 tcacgcttatcattttgttgtgcagatctttcaagatagtgtgtgtgtgtgtgtgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tcacgcttatcattttgttgtgcagatctttcaagatagtgtgtgtgtgtgtgtgtgtgt 179

                    
Query: 181 gtgtgtgtg 189
           |||||||||
Sbjct: 178 gtgtgtgtg 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)