BAC Information

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BAC

Clone NameMSMg01-137O18
Chromosome3 (Build37)
Map Location 95,383,703 - 95,384,260
singlet/doubletsinglet
Overlap geneHormad1
Upstream geneSnx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312
Downstream geneGolph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137O18.T7 (MSMg01no137_o18.b1)MSMg01-137O18.TJ (MSMg01no137_o18.g1)
ACCAG343722AG343723
length720720
length of high quality
(start - end)		646 (75 - 720)557 (74 - 630)
definitionCHROMAT_FILE: MSMg01no137_o18.b1 PHD_FILE: MSMg01no137_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:47 2005CHROMAT_FILE: MSMg01no137_o18.g1 PHD_FILE: MSMg01no137_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGCCGCGG
AATTCTAGTATTACCGTGTTAGTGTGTGCTTACATGTGTATAAATGTATG
TGTGTGTATGTGCGCATATGTGCGCGTGTGGAGTCTGGCTTTCCCTCATC
CGTCTACCTCTCTTACCCAAGTCTGGGGTTTTATATGTGTGCCACTATAC
CTGCCTTGTAGATGACTAACTCCTATTTGGTAATCTTTTGTAAAGTATTT
TAGTATCAGTTTTCAGAAAGAATATTGGTTTATAATTGGCATATTTTTTA
CTGTTTGTTTTGTTGTGATATCAGATTAATACTAGAATCATCAGTAAAAT
GAGGCCAGGAGAGGATATCACATCCAAATATTTTCTTGAAGAGACTATGT
AGAACTCATAGTAAAGTAATTTGAACCTGGATATTTCTTTTTGGAGTACA
GTTGTAGAACTATTATTATTATTATTATTATTTTTGAGACAGGGTTTCTC
TTTGTAGCCCTGGCTGTCCTAGAAATTACTCTGTAGACCAGGCTGGTCTT
GAATTCAAGAGATCCACCTATCTCTGCCTCTGGGCTTAAAGTCGTGCACC
ACTGCTGCATGGCTATTACATTTGTTTATTTATTTTTATATTTAGNCAGT
TATAATTGTATGGGCTTTTCCTAGTGTTGTTGGTCTTGAAGGAGAAGCTT
AATGATTGATTTTGTTTTGT

NCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCTAAACAGGGGTACCTTGTAAGA
CCCAGGCTCAAACAAACAAGTAAAGTAAAACAGAACAAAATAAAATTGAA
AGTCAGATTGAATGACCAAGTTTATACCTGACAATGAGAAATTGAAGGAC
TTTGGCTCTTTTTGAATTGCATAGTTTCTTCTTCCTTACAATCTAAATTT
GGTTCTGTAAAAAAAAAATAAGAAGAGAAGAAAGTTAAATGGTATGAAAT
TGAATTAGTAGTTAATAAACATTTTTGTTAGCTTCTTACCTTTGATTTCA
GAAGCTCCAGAGTTTTCATTCTGTTCGTTCATTTTAGTTTTAATGTCAAA
ATTATTCTATATAAATATGAAAAATTGAACATACTTTAACAATAAATGAA
AACAATTAAGTAGTAATATTAATGAACACATTTGCTTTATGTAAATGATA
AATACAACTATCTTATGCTTGTTAGAAATACAAATGGTGCTAGAATTACT
ACCAAAAAGGATTTTTTTTTTCTTTTTTTGAGGGTTTCTCTGTGTAACAG
CTTTGGCTATTCTGGAACTTGCTTTGTAGACCAGTCTGGTGTCACATCTG
CCTAATTCTGCTCCTAATTAAAGGCATGCACAACCATACCCAACCCACAA
ATTTTATTCAAAAAAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_o18.g1 MSMg01no137_o18.g1 CHROMAT_FILE:
MSMg01no137_o18.g1 PHD_FILE: MSMg01no137_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:47 2005
         (557 letters)



>mm_chr3_95383566_95384523
          Length = 958

 Score = 1048 bits (542), Expect = 0.0
 Identities = 554/558 (99%), Gaps = 1/558 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctaaacaggggtaccttgtaagacccaggctcaaacaaacaagtaaagtaaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 caggctaaacaggggtaccttgtaagacccaggctcaaacaaacaagtaaagtaaaacag 636

                                                                       
Query: 61  aacaaaataaaattgaaagtcagattgaatgaccaagtttatacctgacaatgagaaatt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 635 aacaaaataaaattgaaagtcagatggaatgaccaagtttatacctgacaatgagaaatt 576

                                                                       
Query: 121 gaaggactttggctctttttgaattgcatagtttcttcttccttacaatctaaatttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaaggactttggctctttttgaattgcatagtttcttcttccttacaatctaaatttggt 516

                                                                       
Query: 181 tctgt-aaaaaaaaaataagaagagaagaaagttaaatggtatgaaattgaattagtagt 239
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tctgtaaaaaaaaaaataagaagagaagaaagttaaatggtatgaaattgaattagtagt 456

                                                                       
Query: 240 taataaacatttttgttagcttcttacctttgatttcagaagctccagagttttcattct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taataaacatttttgttagcttcttacctttgatttcagaagctccagagttttcattct 396

                                                                       
Query: 300 gttcgttcattttagttttaatgtcaaaattattctatataaatatgaaaaattgaacat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gttcgttcattttagttttaatgtcaaaattattctatataaatatgaaaaattgaacat 336

                                                                       
Query: 360 actttaacaataaatgaaaacaattaagtagtaatattaatgaacacatttgctttatgt 419
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 335 actttaacaataaatgaaaacaattaagtagtaatattagtgaacacatttgctttatgt 276

                                                                       
Query: 420 aaatgataaatacaactatcttatgcttgttagaaatacaaatggtgctagaattactac 479
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atatgataaatacaactatcttatgcttgttagaaatacaaatggtgctagaattactac 216

                                                                       
Query: 480 caaaaaggattttttttttctttttttgagggtttctctgtgtaacagctttggctattc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 caaaaaggattttttttttctttttttgagggtttctctgtgtaacagctttggctattc 156

                             
Query: 540 tggaacttgctttgtaga 557
           ||||||||||||||||||
Sbjct: 155 tggaacttgctttgtaga 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space:   518556
Effective search space used:   518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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