BAC Information

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BAC

Clone NameMSMg01-137O24
Chromosome3 (Build37)
Map Location 48,330,139 - 48,447,664
singlet/doubletdoublet
Overlap gene1700018B24Rik
Upstream geneLOC100039426, LOC666202, LOC666208
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137O24.T7 (MSMg01no137_o24.b1)MSMg01-137O24.TJ (MSMg01no137_o24.g1)
ACCAG343734AG343735
length721695
length of high quality
(start - end)		649 (73 - 721)236 (122 - 357)
definitionCHROMAT_FILE: MSMg01no137_o24.b1 PHD_FILE: MSMg01no137_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:48 2005CHROMAT_FILE: MSMg01no137_o24.g1 PHD_FILE: MSMg01no137_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,447,017 - 48,447,664)(48,330,139 - 48,330,374)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGAGGGCGGA
ATTCAATCTGTGTTCCTGGGATCAAACCTTGATTACTCTAATTATTAGTT
GGGCACTCTTGAGCAATTTGCTCAGCTGCTCTAAGGTCTTGTTTCCTCAT
CTAGAAAATTGGGATAATCATAGAGTTGGCTGATGGGGCTGCTGTAAGGA
TACATTAAGTGCATTTCTCTGCAGTGTCCCTTGTGCAGGATGTTATTTCA
ATTGCCATTGTTAGTGATAACATTATACCCAACTCCAGTGTAATAGAAGG
GAGGTCTACAATCATCTCACACATTTACCAGGTAAGAAGGAGGGTTTGGG
TAACTTAAGGACATTGGGAATTTTCTCTTTAGAAGAACAAACCAGGGTAG
AATAAAAAAATGAACATTTATTTTTAACTTAGAGGAAGTATGATTAAAGG
GAACTATGTCATAAATTAGAATCTTCTCAAAGGAGACTCCAGGGGAATGT
AAAGCCTCAACCTGTAGAAAAAAAAATTCTCTTTAGAATGGGATACTGAG
TGATTGGTCTAAGCTGCTGCAAACAATCCTGAAATAATTTGGAGAAAATA
TTTGTTTACTTGAAAGAGATTATTAGCTAGGATATCCATATTCAGGTATA
AAATTGAAAATGAACATATTATTTTCAAATTTTTATTTGAGTAAATAAAA
TATTTACTGGAAAAGGGTACC

NCGATGAAGTGNTAGCCTGGNGCCGCCTGGTTTCCAAATATAGGTGACCT
ATAGAAGTTTCCAAGAAATTCTTAAAAAAAAAAAACCAAACAAACAAACC
TGTCATTCCTTAACTTCCTCAATACTGGCATTACAGTTGTTATCCACCCA
ATCCACTTTCCATATTTTTTCTTTAACCTGAAAAAATATACTTGGGCAGT
TTTTGTTGTTCTTGCTCAAATGAAAATATATAACTTTACTTTGTTGGCTT
TCTTAAAAGAATGAGGTAAGTTTATGGTGTGTGTGTGTGTACATGTGTGT
GTGTGTGTGTGTCTGTGTGTGTGCTTCTTTTTTTTTTCAACAAAAACAAT
CCTAAATCTTTTTGACACCACTACCCCAATTCTTANTGTATATGGATTTT
ATGGTGCTGTTTCTGTGTANTTCAAAAAAATCCTTTTCTTTCCCAAAGNG
TGTTNTAGTTTTGTATGGAAAGGCCTTAATTTCTGATCTTGGTCCCCTGT
CTGGGACCCGTTCCAACTAACTGCCAGGTTCTCTGACNNNNNNNNCTGGC
TTCTCAAACTTTTAAAAAGAAAAAAGCTAGGTGTTCTCTTTCATCCNCTC
TTTNGCTANNNNNNNNTATGAAATTTTCCNTTNTAATAACACCCACAAAA
CAACCCACGGCTGGTCTGGTTTGTNCATTGTATTTAAAGAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_o24.b1 MSMg01no137_o24.b1 CHROMAT_FILE:
MSMg01no137_o24.b1 PHD_FILE: MSMg01no137_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:48 2005
         (649 letters)



>mm_chr3_48446688_48447736
          Length = 1049

 Score = 1237 bits (640), Expect = 0.0
 Identities = 646/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaccttgattactctaattattagttgggcactcttgagcaatttgctcagctgctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 caaaccttgattactctaattattagttgggcactcttgagcaatttgctcagctgctct 918

                                                                       
Query: 61  aaggtcttgtttcctcatctagaaaattgggataatcatagagttggctgatggggctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 aaggtcttgtttcctcatctagaaaattgggataatcatagagttggctgatggggctgc 858

                                                                       
Query: 121 tgtaaggatacattaagtgcatttctctgcagtgtcccttgtgcaggatgttatttcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tgtaaggatacattaagtgcatttctctgcagtgtcccttgtgcaggatgttatttcaat 798

                                                                       
Query: 181 tgccattgttagtgataacattatacccaactccagtgtaatagaagggaggtctacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgccattgttagtgataacattatacccaactccagtgtaatagaagggaggtctacaat 738

                                                                       
Query: 241 catctcacacatttaccaggtaagaaggagggtttgggtaacttaaggacattgggaatt 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 catctcacacacataccaggtaagaaggagggtttgggtaacttaaggacattgggaatt 678

                                                                       
Query: 301 ttctctttagaagaacaaaccagggtagaataaaaaaatgaacatttatttttaacttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttctctttagaagaacaaaccagggtagaataaaaaaatgaacatttatttttaacttag 618

                                                                       
Query: 361 aggaagtatgattaaagggaactatgtcataaattagaatcttctcaaaggagactccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aggaagtatgattaaagggaactatgtcataaattagaatcttctcaaaggagactccag 558

                                                                       
Query: 421 gggaatgtaaagcctcaacctgtagaaaaaaaaattctctttagaatgggatactgagtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gggaatgtaaagcctcaacctgtagaaaaaaaaattctctttagaatgggatactgagtg 498

                                                                       
Query: 481 attggtctaagctgctgcaaacaatcctgaaataatttggagaaaatatttgtttacttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attggtctaagctgctgcaaacaatcctgaaataatttggagaaaatatttgtttacttg 438

                                                                       
Query: 541 aaagagattattagctaggatatccatattcaggtataaaattgaaaatgaacatattat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaagagattattagctaggatatccatattcaggtataaaattgaaaatgaacatattat 378

                                                           
Query: 601 tttcaaatttttatttgagtaaataaaatatttactggaaaagggtac 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttcaaatttttatttgagtaaataaaatatttactggaaaagggtac 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no137_o24.g1 MSMg01no137_o24.g1 CHROMAT_FILE:
MSMg01no137_o24.g1 PHD_FILE: MSMg01no137_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:48 2005
         (236 letters)



>mm_chr3_48329939_48330574
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactggcattacagttgttatccacccaatccactttccatattttttctttaacctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactggcattacagttgttatccacccaatccactttccatattttttctttaacctga 260

                                                                       
Query: 61  aaaaatatacttgggcagtttttgttgttcttgctcaaatgaaaatatataactttactt 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaatatacttgggcagtttttgttgttcttgctcaaatgaaaatatataactttactt 320

                                                                       
Query: 121 tgttggctttcttaaaagaatgaggtaagtttatggtgtgtgtgtgtgtacatgtgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttggctttcttaaaagaatgaggtaagtttatggtgtgtgtgtgtgtacatgtgtgtg 380

                                                                   
Query: 181 tgtgtgtgtgtctgtgtgtgtgcttcttttttttttcaacaaaaacaatcctaaat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtgtgtgtctgtgtgtgtgcttcttttttttttcaacaaaaacaatcctaaat 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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