Query= MSMg01no138_b24.b1 MSMg01no138_b24.b1 CHROMAT_FILE:
MSMg01no138_b24.b1 PHD_FILE: MSMg01no138_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:03 2005
(595 letters)
>mm_chr3_136480758_136481756
Length = 999
Score = 955 bits (494), Expect = 0.0
Identities = 538/555 (96%), Gaps = 4/555 (0%)
Strand = Plus / Minus
Query: 1 accacagccatactttaatatattttataatcgtgaccctggaagacaaagcttatgcgt 60
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 555 accacagccatacttgaatatattttataaccgtgaccctggaagacaaagcttatgcgt 496
Query: 61 tttcaatgctgcttcatttctatagtttagaccaatgagatcaagtcaccacactcagac 120
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttctatgttgcttcatttctacagtttagaccaatgagatcaagtcaccacactcagac 436
Query: 121 atttctttactcccaagaatagctgcctgggatctttaaattcagaatttgcagatttat 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 435 atttctttactcccaagaatagctgcctgggatctttacattcagaatttgcagatttat 376
Query: 181 aataatatgtacacacattaaatgccacaaacctgcgtctttccccagtggcctctctat 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 375 aataatatgtacacacattaaatgccacaaacctgcgtccttccccagtggcctctctat 316
Query: 241 tattacttttacttctcagtgtagaagtgatttagtttagaagtgattcagtcagtgcac 300
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 315 tattacttttacttctcagtgtagaagtgattcagtgtagaagtgattcagtcagtgcac 256
Query: 301 caggg----gtgtgtgtgtgtgtgcacgcgtgcccccattcatgcatgttcatgttataa 356
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 255 caggggtgtgtgtgtgtgtgtgtgcgtgcgtgcccccattcatgcatgttcatgttataa 196
Query: 357 atatataaatataaattatatatttataaatataatatataaattatatttacatatgta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 atatataaatataaattatatatttataaatataatatataaattatatttacatatgta 136
Query: 417 attatattacatataaattgtatacctacatgtataatatattacacatataaataatat 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 135 attatattacatataaattgtatacctacacgtataatatattacacatataaataatat 76
Query: 477 ataaattatataataaactataaataacaggtggatttctatataaaaaatttaaaattt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 ataaattatataataaactataaataacaggtggatttctatataaaaaatttaaaattt 16
Query: 537 gtgaatcanaatttc 551
|||||||| ||||||
Sbjct: 15 gtgaatcaaaatttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 999
Length adjustment: 10
Effective length of query: 585
Effective length of database: 989
Effective search space: 578565
Effective search space used: 578565
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_b24.g1 MSMg01no138_b24.g1 CHROMAT_FILE:
MSMg01no138_b24.g1 PHD_FILE: MSMg01no138_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:04 2005
(611 letters)
>mm_chr3_136379962_136380972
Length = 1011
Score = 1096 bits (567), Expect = 0.0
Identities = 600/611 (98%)
Strand = Plus / Plus
Query: 1 tgttcctaaatcatttcctcagtataatggtgcctgtttgtcactctcaaacatgcaact 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 201 tgttcctaaatcatttcctcagtataatagtgcctgtttgtcactctcaaacacgcaact 260
Query: 61 ctatgagaactcccattagtgaaatcaaaggagcgtccagaaaggagagctggcttagag 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ctatgagaactcccattagtgaaatcaaaggagcgcccagaaaggagagctggcttagag 320
Query: 121 gccatatgtcttgatgctgtcagagagatgcaggtactgaaggatgtctggatttgcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccatatgtcttgatgctgtcagagagatgcaggtactgaaggatgtctggatttgcact 380
Query: 181 tggctgaactttaagttgtcagaaccgataagaaaaataaggagtctgtgaggacacagt 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tggctgaactttaagttgtcagaactgataagaaaaataaggagtctgtgaggacacagt 440
Query: 241 gaatcttaagagccataaataaatagcatttatgatctactcccagagttccattacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatcttaagagccataaataaatagcatttatgatctactcccagagttccattacaaa 500
Query: 301 acactcataacagaatttaataaacccttataggagatgtaggctagaattcttggaagc 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattcataacagaatttaataaacccttataggagatgtaggctagaattcttggaagc 560
Query: 361 cattaaagaattactgagtacatctttgccatcacaaagtatacactctgggggctgttt 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattaaacaattactgagtacatctttgccatcacaaagtatacactctgggggctgttt 620
Query: 421 atgtcataggacaataacttgatggcatatgtgaggcttggggaggtaagtagacttgtg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 atgtcataggacaataacttgatggcatatgtgaggcttggggaggtaagtagactcgtg 680
Query: 481 gaccacttcactcacaagtcctgacataatgatgctgcacagtatgccaccacaatctac 540
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 681 gaccacttcactcacaagtcctgatataatgatgctgctcagtatgccaccacaatctac 740
Query: 541 acatcaccctggtcagtaaccgatatcctgtacttgctattgagggtatgtctgctaaca 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 741 acatcaccctggtcagtaaccgttatcctgtacttgctattgagggtatgtctgctagca 800
Query: 601 tttcccttgcc 611
|||||||||||
Sbjct: 801 tttcccttgcc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
