BAC Information

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BAC

Clone NameMSMg01-138C20
Chromosome3 (Build37)
Map Location 93,374,932 - 93,375,512
singlet/doubletsinglet
Overlap genenone
Upstream geneIvl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10
Downstream geneEG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138C20.T7 (MSMg01no138_c20.b1)MSMg01-138C20.TJ (MSMg01no138_c20.g1)
ACCAG343908AG343909
length784706
length of high quality
(start - end)
183 (44 - 226)580 (68 - 647)
definitionCHROMAT_FILE: MSMg01no138_c20.b1 PHD_FILE: MSMg01no138_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:08 2005CHROMAT_FILE: MSMg01no138_c20.g1 PHD_FILE: MSMg01no138_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGACATGTCTGCTAGAGCCAGGTATGGTGAGGTAGGGAGTGGTAC
CCTGGTGGGCCCATGCTGAGGCATCCCTTCCCCCTCAGATAATAGCCATA
TAACAGGATTAGTAGAGGAAAAAATTTTATTTATAGCATGGGAAGTGGAG
GTGAGTAGGGATGAGAAGACAGGAGAGGCAGAGGAAGACCGAACAAGAAG
ACAGAGAAAGAGAGGGTGAGGCAGAGAGAGGTAGACACACTACACGGCTC
CTCCTCTCTTCCCTCCCCCCCCTTTTTTTTTCCTCGTCCCCTACGCTCCC
TCTCCGATCCACTTTACTCCCACCCCCCCACCCCCCCCCTTCTATTCCCT
ACTCCTTTTCAATCTTTCTCTACCCCCCCCACTCTTCCCCTTCACCCCCC
AACCCCTCCCTCATCTCCCATCTTCCTCTCCTTACCTTTCCCCTACTTCC
CCCCCCCCACCCCTTCCTCCTTCTCCCCCTCCCACTCCATTCCCTCCCCC
CTCCTCTCTGCCATCTCACACCCTCTCCCTTCCTTCTCTCAGCTTCCACT
CTCCCCCCCCTCCACTCCCCTCCCTTTATCCCTCTCCCCTCCATTCTCCC
TCTCCCCCTCCTCTAGTCCCCCCCTCCCTCTTCCTTTTTCCCCATATCCT
CCCCCCTTCTCCCTCTTCCTCACCCTCCCTTTCTCATCCCTCCTTCCTCT
CCTCCACTATCCTCTCTTCCTCTCATTTACCTCA
ATGAAGTGCTAGGCTGGCGGCGCCTGGTTCTAAXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTAACAAGTAAGTGATCAGTGGGTAGGTGAG
ACTAATCAGAGGAGTGTCAGCAGAAGGTTGGAAGCTCTCTAGTTCTTGGA
GGTTAGAAATCTGGATAGCAGTCAACAATCACTATGCTCATTCTATCTTG
CCTGTTCATTCTATGTTGTCTGTCTCACAGCTATGAACTTGTTTACTCTT
TCCGGGTGGGAGCTGCTATGCTGTGCTTGCTTTTCAGGTGATTTGATCAA
GGGTAGAGACGATTGATGATGGAGCAGTTAGACTGCCCAATTCTTTAGAC
TGCCTGAGATTTTATTTCTTCCCTCCTCTTTGGCATCCAGACAGAGCAGG
AGGGAACAATGGAATCCCTGTGGTACTAAGTCTCTAAGAGGGCAAAGTGT
GACTGGCTGAAGGGGACTGTGCTCACATGGAAAGTGAGCAGAGCTAGACT
GTATGCTGGGGGAACAATGAATAGTAAGGAGTAAAGGCTATGTGGGCTGT
GGTATTGGAGACCCTCTGTTGTAAACACTACAGATCTACAGTTTGAGTAT
TACTATTCCTTTGGGAGAAAGAGGTGACTTGTACTCAAAAGGAGCTTATC
AAACTATAGATACTCATTCTTCATGTTCCTCAATGGGCCTTCTCACCATG
TTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_c20.g1 MSMg01no138_c20.g1 CHROMAT_FILE:
MSMg01no138_c20.g1 PHD_FILE: MSMg01no138_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:08 2005
         (580 letters)



>mm_chr3_93374732_93375712
          Length = 981

 Score = 1031 bits (533), Expect = 0.0
 Identities = 569/581 (97%), Gaps = 1/581 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttt-aacaagtaagtgatcagtgggtaggtgagactaatcagaggagtgtcagcagaag 59
           |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaaacaagtaagtgatcagtgggcaggtgagactaatcagaggagtgtcagcagaag 260

                                                                       
Query: 60  gttggaagctctctagttcttggaggttagaaatctggatagcagtcaacaatcactatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttggaagctctctagttcttggaggttagaaatctggatagcagtcaacaatcactatg 320

                                                                       
Query: 120 ctcattctatcttgcctgttcattctatgttgtctgtctcacagctatgaacttgtttac 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 ctcattctatcttgtctgttcattctatgttgtctgtctcacagctatgaacttgcttac 380

                                                                       
Query: 180 tctttccgggtgggagctgctatgctgtgcttgcttttcaggtgatttgatcaagggtag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttccgggtgggagctgctatgctgtgcttgcttttcaggtgatttgatcaagggtag 440

                                                                       
Query: 240 agacgattgatgatggagcagttagactgcccaattctttagactgcctgagattttatt 299
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgattgatgatggagcagttagactgcccaattctttagactgcctgagattttatt 500

                                                                       
Query: 300 tcttccctcctctttggcatccagacagagcaggagggaacaatggaatccctgtggtac 359
           |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tctttcctcctctttggcatccagacagagcaggagggaacaaaggaatccctgtggtac 560

                                                                       
Query: 360 taagtctctaagagggcaaagtgtgactggctgaaggggactgtgctcacatggaaagtg 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagtctctaagatggcaaagtgtgactggctgaaggggactgtgctcacatggaaagtg 620

                                                                       
Query: 420 agcagagctagactgtatgctgggggaacaatgaatagtaaggagtaaaggctatgtggg 479
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 621 agcagagctagactgtatgctgggggaacaatgaatagtaaagagtaaagcctatgtggg 680

                                                                       
Query: 480 ctgtggtattggagaccctctgttgtaaacactacagatctacagtttgagtattactat 539
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtggtattggagaacctctgttgtaaacactacagatctacagtttgagtattactat 740

                                                    
Query: 540 tcctttgggagaaagaggtgacttgtactcaaaaggagctt 580
           ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 tcctttgggagaaagaggtgacttgtactcaaagggagctt 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space:   553470
Effective search space used:   553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)