BAC Information

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BAC

Clone NameMSMg01-138D15
Chromosome3 (Build37)
Map Location 54,409,737 - 54,410,242
singlet/doubletsinglet
Overlap genenone
Upstream geneFrem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807
Downstream geneB020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138D15.T7 (MSMg01no138_d15.b1)MSMg01-138D15.TJ (MSMg01no138_d15.g1)
ACCAG343945AG343946
length698738
length of high quality
(start - end)
544 (54 - 597)78 (86 - 163)
definitionCHROMAT_FILE: MSMg01no138_d15.b1 PHD_FILE: MSMg01no138_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:12 2005CHROMAT_FILE: MSMg01no138_d15.g1 PHD_FILE: MSMg01no138_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGGGGNNNNATCTATAATTGCGGCCGCTNTACGACTCCTATTTCGAGAGG
AGCCGCGGAATTCCTCGAGGACCTTTTATAGTTCTGTCATCCCCAGTGTT
CAAACAGTAGGAGGCTCTTTTATTTTTCCTGTAGAAAACTATATGATTTT
GTGGGAATCATGAGTTGGAAATAGAAATTAATTCCAACTTGTGATTCTTT
GCTTATCTCTAAGGAGAACGCTAAAACCAAGCCTTTTACCGGATGGCACG
AACCTAAACCAATGCAGACATTTCTAACTCACAGCTGCTGGTAGGTTCAT
GCTCAGCCACGCTGCAAAGTTCAGTTACATGATTGCATGATTGAAGTACT
GCTTTCGGTTGCCACTTCAAAGTCAATAGTTGCTGGCATATGTGAAGCAT
CATTTATTATAAAATATGGTTATCTTTCCTGTCACTGAAAATGAGTGTGC
TTTCATTTACTGTAATGTCTTCCATTGTTTGAAGCATACCAGACAGACAG
CAAACATTCAATATTCTTTTTAAAAATGTAAATAAACACACACACACACA
CATGCACACACGTGCGTGCCCGTGAACATGAGGATTTGTCTGTGCACCAA
GTGTGTATAGGAGGCAGTGGAGGCCAGAAGAGGGCACTGGATTCCCTGGA
ACTGGAATTACAGATGGTTGTAAGCCACTATGTGGCTTCTGCGATTGT
TCTCTCTNNTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAATACCTCGT
GGGAAAGCTGAGGTCACCCCAGAGCCAAAACTAGAGAAGCTTCAGGTAAG
AGATGGGAGGGAGGAAGGGAGGGCCACAGGCAGACAACGGGCCTGGTTGC
TCGTATGTTTTGACCTTCGCCCCTCCTGCTGCCCTCTGCCTCGCCTCTCC
TCCGTACTCTCCCCCTTTCTGTTTCCCTTCCTCTTTCCCCTTACCCTGTA
TCTCCCTTTTCCCGCCCACATCTCTCCTTGTTCTTTTTTTTCTCTCCCTC
TCTTCCTCTCCTGTCTTTCTTCTTGCTCTCCCCCCTGCTCCCTCTTTCCT
GTTCGATTCCTTCTCCACTATCCCCGTTTTTCCCCCCTCTCCTTTTTTCC
CCCCCTTTCTTGTCTTCCTTGTGTTCCGCGTCCTTTATCACTTTTCCTCC
TCTCTCCTTCTCTCTCTCTGTCCCCCTCCCCCTCCTCCCTTCTTCTATTC
CTCTTCCCTCTTCTCTCTCCTCTCTTCTCTCCCTCCCTCTCTTCCTCTTC
TTTCTCTTTTTCCCCCTCCCCTTCCTCTTTCCCTTCCCTCTTCTTTTACT
CCCCCTTTTTCCTCCTCTTTTTTCCCTTCTTTCCTCTTTTTTTTTTCTTT
TTTTTTCTTCTTTTTCCCCCCTTTTCTCCCTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_d15.b1 MSMg01no138_d15.b1 CHROMAT_FILE:
MSMg01no138_d15.b1 PHD_FILE: MSMg01no138_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:12 2005
         (544 letters)



>mm_chr3_54409558_54410504
          Length = 947

 Score =  890 bits (460), Expect = 0.0
 Identities = 495/508 (97%), Gaps = 5/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcgaggac-cttttatagttctgtcatccccagtgttcaaacagtaggaggc 62
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 685 ggaattcctcgaggacatttttatagttctgtcatccccagtgttcaaacagtaggagtc 626

                                                                       
Query: 63  tc--ttttatttttcctgtagaaaactatatgattttgtgggaatcatgagttggaaata 120
           ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttttttttttttcctgtagaaaactatatgattttgtgggaatcatgagttggaaata 566

                                                                       
Query: 121 gaaattaattccaacttgtgattctttgcttatctctaaggagaacgctaaaaccaagcc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 565 gaaattaattccaacttgtgattctttgcttatctctaaggagaacactaaaaccaagcc 506

                                                                       
Query: 181 ttttaccggatggcacgaacctaaaccaatgcagacatttctaactcacagctgctggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttaccggatggcacgaacctaaaccaatgcagacatttctaactcacagctgctggta 446

                                                                       
Query: 241 ggttcatgctcagccacgctgcaaagttcagttacatgattgcatgattgaagtactgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggttcatgctcagccacgctgcaaagttcagttacatgattgcatgattgaagtactgct 386

                                                                       
Query: 301 ttcggttgccacttcaaagtcaatagttgctggcatatgtgaagcatcatttattataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcggttgccacttcaaagtcaatagttgctggcatatgtgaagcatcatttattataaa 326

                                                                       
Query: 361 atatggttatctttcctgtcactgaaaatgagtgtgctttcatttactgtaatgtcttcc 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatgattatctttcctgtcactgaaaatgagtgtgctttcatttactgtaatgtcttcc 266

                                                                       
Query: 421 attgtttgaagcataccagacagacagcaaacattcaatattctttttaaaaatgtaaat 480
           ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 265 attctttgaagcataccagacagacagcaagcattcaatattctttttaaaaatttaaat 206

                                       
Query: 481 aaacacacacacacacacatgcacacac 508
           |||||||||||||||||||  |||||||
Sbjct: 205 aaacacacacacacacaca--cacacac 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 947
Length adjustment: 10
Effective length of query: 534
Effective length of database: 937
Effective search space:   500358
Effective search space used:   500358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)