BAC Information

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BAC

Clone NameMSMg01-138J12
Chromosome3 (Build37)
Map Location 107,941,182 - 107,941,309
singlet/doubletsinglet
Overlap geneGnai3
Upstream geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2
Downstream geneGpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138J12.T7 (MSMg01no138_j12.b1)MSMg01-138J12.TJ (MSMg01no138_j12.g1)
ACCAG344220AG344221
length713747
length of high quality
(start - end)
425 (49 - 473)128 (82 - 209)
definitionCHROMAT_FILE: MSMg01no138_j12.b1 PHD_FILE: MSMg01no138_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:40 2005CHROMAT_FILE: MSMg01no138_j12.g1 PHD_FILE: MSMg01no138_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCNCCTCTATAATTGCGGCGCTAAACGACTCCTATTCCAAGAGGATCC
GCGGAATTCCCTGTCTTCCTTCTATCAAAGCTGACACTCCCGTCCCCACT
CCTACTGCCATACCTATTCCCATGAATGCAGCCAGGGTTAAAGTAATTGG
TTCTCTTTTTGACCGCCGGCCAGCATAGCTTTCTTCTAAACTGGATGCAG
GGTGATAATATACGCGGGGTAACAGCTGGATCATGACACAAAAATCATGA
GATGAATTAAAAACCTTAGTTGATACACAGGGAGTAAGTCCTGTATTGCA
AGCCCACCATCCAACCGGGGAAGGTACTAGATAGTAATTAGCTTCCGTTC
TGGACACGGACTGAATTTGTCCGCATAGGTGTTTGTGAGTGGAAGGTGGG
GTACCTATACAGAGACCTGGATTCCTCGCGGATACTTCAGTCAGGGTCAG
TTTTTGTCCTGTACCCCAAGAGCAGGAAGTATGGCTGCTGGTTCTGTTGA
AATCTCCATTGAAGGCGATTCCTTCATAATAAGGCGGACCCAAAGACAGG
CATAGCCAGCAGTCCTCAGTAGCGCTTGGATCAGCTCTGTTAAGGGCCTA
AAAAGCTCCTCCCATTAGGTTAAACATCCTTCTGCCTTGAAGAAATCGGG
TGGCCAATTATTCCAGGTACCCTGACGCGTGGGTAGTCTGCCTTATCACC
CCTCTTTTATATC
CCCCNNCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTCAGCCAAGATTACA
AAGAAAAGCCCTGTCTCAGAGGGAGGGGGAGACATGTAGCTTTCTGACTA
CCCCTTTCTTTTTGACTGGTTGACTTATTTTGTGTGGGGTATGAGTGTGG
GTGTGGATGNNCCCNNCCCCCCCCCCTTNCCCTTCTCCCTTTCCCCTTTT
CCTCCCTCTTTTCTTTCCTCTTCTCTCTTCTCCTCCCCCCTCCCTCTTCT
CCCCCCTCCTTCCTCTCTCTCTTTTTTTTTTTTTCCTCCCATCCAACTTC
CCACCACCATACACCCTTTTCTCCCCACCCCTTCCCTCCCCTTTGTATCC
CACTCCTTTCCCGTCCCTCCCCTTCCCTTTTCCCTCCTCCCTTCCCCCTC
TTTCTCCTTTTATTTCTTTCCCTCTTTCCTCCCTTTCCTCTTACCCCCTA
TTTTCTCCCCTCTTCCTTCTCCTCCCCCCCCTTATCCTCCCCTCTTCTCT
CTCCCCTTTCTTCTATCCCCCCCCTACTCTCCTTCATCCCCCCCCTCCCT
ATCCTCACCCCCTTCCCTTCCCTTTTCTTTCCCTCCCTCTCCTACCTTAC
CCTCCCTCTTCTCCATATCCTACATACTGTATTCTCCTCTCTTTTCCCCC
TCCTTCCTTCCACTATTTTCTCTCCTTCCTTAATTCCCCCCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_j12.g1 MSMg01no138_j12.g1 CHROMAT_FILE:
MSMg01no138_j12.g1 PHD_FILE: MSMg01no138_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:40 2005
         (128 letters)



>mm_chr3_107940982_107941509
          Length = 528

 Score =  232 bits (120), Expect = 5e-66
 Identities = 126/128 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtcagccaagattacaaagaaaagccctgtctcagagggagggggagacatgtagct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 328 ttggtcagccaagattacaaagaaaagccctgtctcagagggagggggaggcgtgtagct 269

                                                                       
Query: 61  ttctgactacccctttctttttgactggttgacttattttgtgtggggtatgagtgtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttctgactacccctttctttttgactggttgacttattttgtgtggggtatgagtgtggg 209

                   
Query: 121 tgtggatg 128
           ||||||||
Sbjct: 208 tgtggatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)