TCTTCTNNNNATTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGA
GAATCCGCGGAATTCTCACCTGAGTAACACCGAATGGCAGAGAAACACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGCC
GGTTCCTCAGAAAATTGGACATAGTACTAAAGGAGGATCCTGCAATACCT
CTCCTGGGCATATATCCAGAAGATGTTCTATCTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCCATCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCAAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGGCAAATGGATGGACCTGTAGGGCCTCATCCTGAGTGAGGTAACAC
ATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAG
CCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATG
AAACTCAA

AACCCNNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAAATTTTAATGC
AATTATTTACAAATTAAAAAAAACAGTAAAAGTCCAATCTGATCTATAAA
ATTTCTCATGTAAACAAAAGGATAATCAGCAATGTAGTAATATCACCAAA
CTTGATTTCAAGTTATACTACTGAATGGTAATAACACTTGTACTATAAGA
CTACATCAGATACATTTCCACTGACTGCAACTGAGCAATAATAAGTTTAT
AAGCATTAATTTATTAGAAATATATAAAAAATATACAATTATATTTTAGA
TAATATAATTATTATATCAAATCATGATTTGAAAATTGGATATTCACCTA
TAGTAAAAAATTAAATTAGATCTATATTCAATTACACTTAAAAATAATGC
TAAGTGGAGGAAATACCTTATTATAAAATCCAAAGCATTTAAAAAATTTT
TAGCTGAATAATGAAAAAAAACAGTTCAAGCTGCAGATATAGGCAAGTAT
TTTCTGAATAGGAATTCAGCCACTTAGGAAATAACACAGACAATTAAGAA
CTGAGACATCATGAAATTTGAGTTTCCCAATGCACCAAAACAGATACTTA
AATCANAAGAAAGCCTACAGAGGAGGAAGTTTTGCTAGCTACATTTCTGA
CAGCA

Query= MSMg01no138_j23.g1 MSMg01no138_j23.g1 CHROMAT_FILE:
MSMg01no138_j23.g1 PHD_FILE: MSMg01no138_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:43 2005
         (618 letters)



>mm_chr3_11463491_11464509
          Length = 1019

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%), Gaps = 2/423 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaaaattttaatgcaattatttacaaattaaaaaaaa-cagtaaaagtccaatctga 59
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 422 tttaaaaattttaatgcaattatttacaaattaaaaaaaaacagtaaaagtccaatctga 363

                                                                       
Query: 60  tctataaaatttctcatgtaaacaaaaggataatcagcaatgtagtaatatcaccaaact 119
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 362 tctataaaatttctcatgtaaacaaaagaataatcagcaatgtagtaatatcaccaaact 303

                                                                       
Query: 120 tgatttcaagttatactactgaatggtaataacacttgtactataagactacatcagata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgatttcaagttatactactgaatggtaataacacttgtactataagactacatcagata 243

                                                                       
Query: 180 catttccactgactgcaactgagcaataataagtttataagcattaatttattagaaata 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 catttccactgactgcaactgagcaataataagtttataagcattaatttattagaaata 183

                                                                       
Query: 240 tataaaaaatatacaattatattttagataatataattattatatcaaatcatgatttga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tataaaaaatatacaattatattttagataatataattattatatcaaatcatgatttga 123

                                                                       
Query: 300 aaattggatattcacctatagtaaaaaattaaattagatctatattcaattacacttaaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aaattggatattcacctatagtaaaaaattaaattagatctatattcaattacacttaaa 63

                                                                       
Query: 360 aataatgctaagtggaggaaataccttattataaaatccaaagcatttaaaaaattttta 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 62  aataatgctaagtggaggaaataccttattataaaatccaaagcatttaaaaaatttt-a 4

              
Query: 420 gct 422
           |||
Sbjct: 3   gct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space:   613472
Effective search space used:   613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)