BAC Information

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BAC

Clone NameMSMg01-138K09
Chromosome3 (Build37)
Map Location 57,943,436 - 57,943,975
singlet/doubletsinglet
Overlap geneLOC100040216
Upstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594
Downstream gene4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138K09.T7 (MSMg01no138_k09.b1)MSMg01-138K09.TJ (MSMg01no138_k09.g1)
ACCAG344261AG344262
length716708
length of high quality
(start - end)
449 (48 - 496)540 (74 - 613)
definitionCHROMAT_FILE: MSMg01no138_k09.b1 PHD_FILE: MSMg01no138_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:44 2005CHROMAT_FILE: MSMg01no138_k09.g1 PHD_FILE: MSMg01no138_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGAATACAATATACAGTATACTAAAAACACTGTTAGTGGTA
CTAAGAGGAAGGTTTATAACACTAAAAAAAAAAAAAAAAAAAACAAAACA
AAACCAAAAAACCAAAAACCAAAAAACCAAAAAAAAAAAAAAAAAAAAAC
CAACCCCAACAAACCAAAACAAACCAAAACAAAAAATCTAGGAGGGATCT
CACACTAGCAATTTAACAGCACACTTGAAAAGTTTCTGAACAATGGTCTT
AACTTATGGGTCATGACCCCCTGGTAGCCAACCAAAGTTTTCACAGGGAT
CTTATATCAGATATCCTGATTCATAAAAGTAGCAAAATTGCAGTTACAAA
GTAGCAATGAAAATAATTTCACTATCAGGGGTGGTCACCAAAACATGAGG
TTACAGCATGAGTAAGGTTAAAAACCACTGCCTTAGAACAAAAAAGAAGT
ACCCACACCTAAAAGGAGTAGAGGGTAAGAAATAATCAAACTGAGGTTCA
AAATCTATAAAATAGAAACAAACTGAATATTACACAGAGTCATTGAATCC
AAGGGTTGGTTCTTCGAAAAAAATCGACCAATTAGACAAATCCACTGATA
TTGATAGGAATAAGTGGTCAAGTGATGCTGAAACCTATTATTTTGTTGCC
GTTGTCGTTGCGTTTC
NCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACTCCTAATCGCTGCTTTCTATGCG
GGAACACCATATCCACCAGCAGCAAATTTCTCCTTGCCTTTGCCTTCCTG
CTAAAGCTTACATTTTTTATAGGCATGTATAGGTAGACAGATCTATGGCC
TCTTGCTATGAGTAAATACCCTCAACAGAATAAAATCCTAAGGTATTTTG
TTTAAGCAATAGAAAACGCTCAAATACAGACCCCCCAAAGAAATACAAGA
CAAGTAGGGATGTTGGTTCTAACAGCAAAGAGCCTCAAAAGTCTTCCCAT
TCACTTCTGGACGGGCCTCCACTCACAGCACACTACAGAGTGCTTGAAAG
CCACAAGCTTGACTCACCTTCTGACTTAGCCCCTGTTAGCATTGTTGTGA
TGAAACGTCATTACAAAAAGCAACTTGAAAAGGAAAGGGTTTATTTGGCT
TATATATCCTGGATCTCGGTCCACTGAGGAAAGCCAAGGCAGGAACTCAA
ACAGAGGAGAAACACAGAAGCAGGAGCTGATGCAGAGGCCACAGAGAAGT
ACTCCTTACTCACGTGTTCCGCCTGCTTTCTTATAAAACCCAGAACCACA
AGCCTAGGTAGAGTACTACTCATCAGAGGCTGACGTCTCCCATCTTTTAC
TATATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_k09.g1 MSMg01no138_k09.g1 CHROMAT_FILE:
MSMg01no138_k09.g1 PHD_FILE: MSMg01no138_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:45 2005
         (540 letters)



>mm_chr3_57943236_57944175
          Length = 940

 Score =  975 bits (504), Expect = 0.0
 Identities = 531/540 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactcctaatcgctgctttctatgcgggaacaccatatccaccagcagcaaatttctcc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tcactcctaatcgctgctttctatgcgggaacaccatatccacccgcagcaaatttctcc 260

                                                                       
Query: 61  ttgcctttgccttcctgctaaagcttacattttttataggcatgtataggtagacagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcctttgccttcctgctaaagcttacattttttataggcatgtataggtagacagatc 320

                                                                       
Query: 121 tatggcctcttgctatgagtaaataccctcaacagaataaaatcctaaggtattttgttt 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tatggcctcttgctatgagtaaataccctcaacagtataaaatcctaaggtattttgttt 380

                                                                       
Query: 181 aagcaatagaaaacgctcaaatacagaccccccaaagaaatacaagacaagtagggatgt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 aagcaatagaaaacgctcaaatacagactccccaaagaaatacaagacaagtagggatgt 440

                                                                       
Query: 241 tggttctaacagcaaagagcctcaaaagtcttcccattcacttctggacgggcctccact 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 441 tggttctaacagcaaagagcctcaaaactcttcccattcacttctggaccggcctccact 500

                                                                       
Query: 301 cacagcacactacagagtgcttgaaagccacaagcttgactcaccttctgacttagcccc 360
           |||| |||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 501 cacaacacactacagagtgcttgaaagccacaagcttgacttagtttctgacttagcccc 560

                                                                       
Query: 361 tgttagcattgttgtgatgaaacgtcattacaaaaagcaacttgaaaaggaaagggttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttagcattgttgtgatgaaacgtcattacaaaaagcaacttgaaaaggaaagggttta 620

                                                                       
Query: 421 tttggcttatatatcctggatctcggtccactgaggaaagccaaggcaggaactcaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttggcttatatatcctggatctcggtccactgaggaaagccaaggcaggaactcaaaca 680

                                                                       
Query: 481 gaggagaaacacagaagcaggagctgatgcagaggccacagagaagtactccttactcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggagaaacacagaagcaggagctgatgcagaggccacagagaagtactccttactcac 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)