Query= MSMg01no138_m19.b1 MSMg01no138_m19.b1 CHROMAT_FILE:
MSMg01no138_m19.b1 PHD_FILE: MSMg01no138_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:57 2005
(671 letters)
>mm_chr3_77882856_77883926
Length = 1071
Score = 1253 bits (648), Expect = 0.0
Identities = 663/668 (99%), Gaps = 1/668 (0%)
Strand = Plus / Plus
Query: 5 gaattcctcagtgtactctgttaaaatgcctataacaagggccagtgtactacaagaata 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctcagtggattctgttaaaatgcctataacaagggccagtgtactacaagaata 263
Query: 65 aaataaaagcaatttattgtgtgtgccttgggttcctgtatacatcttccaaactgattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaataaaagcaatttattgtgtgtgccttgggttcctgtatacatcttccaaactgattc 323
Query: 125 ttttaacctttattctaatttaattggtgcttagtaattttacgtatttatgacacaaag 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttaatctttattctaatttaattggtgcttagtaattttacgtatttatgacacaaag 383
Query: 185 tatgctcatttaatataaatttataatacttagtgattaattcagggaacttggcatttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatgctcatttaatataaatttataatacttagtgattaattcagggaacttggcatttt 443
Query: 245 tcttctaaataaacatctattatttcttttgattgggaaactaaaattctcttagttttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttctaaataaacatctattatttcttttgattgggaaactaaaattctcttagttttt 503
Query: 305 ttttatataaagtacaaaagtttctaaaaatttatccatctattatgctatatagcttta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttatataaagtacaaaagtttctaaaaatttatccatctattatgctatatagcttta 563
Query: 365 aagctcaggttttctacataaatgcatggctgtctctgaacctctctttctttacctttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagctcaggttttctacataaatgcatggctgtctctgaacctctctttctttacctttt 623
Query: 425 ttcctctggtgggac-acaatatattctgattagagtttcccctccctcctagttcctcc 483
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcctctggtgggaccacaatatattctgattagagtttcccctccctcctagttcctcc 683
Query: 484 acaccacccctatataccagaatcacatcttatctgtctctagtctctgctgctcttatg 543
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acaccacccctacataccagaatcacatcttatctgtctctagtctctgctgctcttatg 743
Query: 544 caaggtgcatgtttttctgttccaggcttactttgctatatcctctaaggtctgcccatg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caaggtgcatgtttttctgttccaggcttactttgctatatcctctaaggtctgcccatg 803
Query: 604 ttaccataaatgacaagttttcctttctgtggttgattaatctttcattgtatccatgtg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttaccataaatgacaagttttcctttctgtggttgattaatctttcattgtatccatgtg 863
Query: 664 ctactttt 671
||||||||
Sbjct: 864 ctactttt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_m19.g1 MSMg01no138_m19.g1 CHROMAT_FILE:
MSMg01no138_m19.g1 PHD_FILE: MSMg01no138_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:57 2005
(626 letters)
>mm_chr3_77980813_77981838
Length = 1026
Score = 766 bits (396), Expect = 0.0
Identities = 450/468 (96%), Gaps = 4/468 (0%)
Strand = Plus / Minus
Query: 4 tcttgagtacataccatatactctatgaagtttctcattctttttcttttagtgaagtgc 63
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 466 tcttgagtacataccatatactctatgaagattctcattctttttcttttagtgaagtgc 407
Query: 64 ttttgacaagttttccttctgtggaattctttcagtgatggaaatggatctgttttattc 123
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 406 ttttgacaagttttccttctctggaattctttccgtgatggaaatggatctgttttattc 347
Query: 124 caggaaaatgctattagtactaatagtcatatatcagccacgctgtaggtgttgaggata 183
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 346 caggaaaatgctattagtactaatagtcatacatcagccatgctgtaggtgttgaggata 287
Query: 184 acaaaatgatgcccatagacataaagagatgaata-aatcaaccaccgacttagagaatt 242
|||||||||||||| | |||||||||||||||| | |||||||||| |||||||||||||
Sbjct: 286 acaaaatgatgcccgtggacataaagagatgaa-agaatcaaccactgacttagagaatt 228
Query: 243 ttaatatgtatctttaaaataacaacttatcattatactgatagattaataggcgtatta 302
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct: 227 ttaatatgtatctttaaaataacaacgtatcattatactgatagattcataggcatatta 168
Query: 303 atctcttctcatttaagaagcttgtatttgtgacagagagttggtaattagcatagagac 362
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 167 atcccttctcatttaagaagcttgtatttgtgacagagagttggtaattaacatagagac 108
Query: 363 caacaacctcatcaaagtaaagaaaataagcaac-attggaatgtttggctctaagtgga 421
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 107 caacaacctcatcaaagtaaagaaaataagcaacta-tggaatgtttggctctaagtgga 49
Query: 422 atccatctatttgtctgtatatctgtctgtctatatgtatgtctatat 469
||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 atccatccatttgtctgtatatctgtctgtctatatgtatgtctatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
