Query= MSMg01no138_n13.b1 MSMg01no138_n13.b1 CHROMAT_FILE:
MSMg01no138_n13.b1 PHD_FILE: MSMg01no138_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:01 2005
(418 letters)
>mm_chr3_27640249_27641066
Length = 818
Score = 630 bits (326), Expect = 0.0
Identities = 379/410 (92%), Gaps = 22/410 (5%)
Strand = Plus / Minus
Query: 9 tccagtcacatgcggtgtattaccaggtacattttgtcatctgataaagttttcctcaca 68
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 759 tccagtcacatggggtgtattaccaggtacattttgtcacctgataaagttttcctcaca 700
Query: 69 tagattagttttgaagttggctttgttgatggtacttttggccataaaactctttagctt 128
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 699 tagattagttttgaagttggttttgttgatggtacttttggccataaaactctttagcct 640
Query: 129 ttaggtatgtatgttcatatttaataaacagtatcacttagggatttccttagtaaagaa 188
||||||||||||||||| |||| |||||||||||||||||
Sbjct: 639 ttaggtatgtatgttca--------------tatc--------atttccttagtaaagaa 602
Query: 189 tgtctccaatttttatattagccatactcaatgaaagattattttacagttttgtctata 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgtctccaatttttatattagccatactcaatgaaagattattttacagttttgtctata 542
Query: 249 agtgcttggtatttttgtcaaatacactgctgtttattttgaatttttacttttgtaatc 308
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 541 agtgcttggtatttttgtcaaatacactgctgtatattttgaatttttacttttgtaatc 482
Query: 309 actccattgaggcatagctagcacacatcccataaaagacctcagggtgaatgtggagtg 368
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 actccattgaggcatagccagcacacatcccataaaagacctcagggtgaatgtggagtg 422
Query: 369 ggatgcttctagcagggttttgtagttgcacactcttccctcacagtcat 418
||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 421 ggatgtttctagcagggttttgtagttgcacaatcatccctcacagtcat 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_n13.g1 MSMg01no138_n13.g1 CHROMAT_FILE:
MSMg01no138_n13.g1 PHD_FILE: MSMg01no138_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:01 2005
(481 letters)
>mm_chr3_27512441_27513322
Length = 882
Score = 849 bits (439), Expect = 0.0
Identities = 472/483 (97%), Gaps = 2/483 (0%)
Strand = Plus / Plus
Query: 1 tttc-cagtcctatcagaaagttacaatcactggccccaggttaaaacaatacatactgc 59
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tttcacagtcctatcagaaagttacaatcactggccccaggttaaaacaatacatactgc 259
Query: 60 caggcagtggtggcgcacacctttaatcccagcactcaggaggcagaggcaggcggattt 119
|||| |||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 260 cagggagtggtggcgtacgcctttaatcccagcactcaggaggcagaggcaggtggattt 319
Query: 120 ctgagttcgaggccagcctggtctacagagtgaattccgggacagcccgaactacagaga 179
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 ctgagttcgaggccagcctgatctacagagtgaattccgggacagcccggactacagaga 379
Query: 180 aaccctgacttgaaaaaccaaaaaaataaaaagataaaacagtacatactgggtatctgt 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaccctgtcttgaaaaaccaaaaaaataaaaagataaaacagtacatactgggtatctgt 439
Query: 240 cctggaaggggactgagcatctgctgggaaaatatcaggcactgacggaacccagccctg 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 cctggaaggggactgagcatctgctgggaaaatatcaggcactgacagaacccagccctg 499
Query: 300 acagagccactctgcccccatgtgataaggcaatgtgcacaacaaccatgcctctcccgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acagagccactctgcccccatgtgataaggcaatgtgcacaacaaccatgcctctcccgt 559
Query: 360 ctcccaacctgtacactggactagacaatc-gtgtctcagtgtctaccggcctcgaggaa 418
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 560 ctcccaacctgtacactggactagacaatccgtgcctcagtgtctaccggcctcgaggaa 619
Query: 419 aagactctgctagtgaattttcagctgcacggcagtaagcagcttgctcggcaggagagc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagactctgctagtgaattttcagctgcacggcagtaagcagcttgctcggcaggagagc 679
Query: 479 tca 481
|||
Sbjct: 680 tca 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
