Query= MSMg01no139_a05.b1 MSMg01no139_a05.b1 CHROMAT_FILE:
MSMg01no139_a05.b1 PHD_FILE: MSMg01no139_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:15 2005
(662 letters)
>mm_chr3_32623881_32624943
Length = 1063
Score = 1031 bits (533), Expect = 0.0
Identities = 542/545 (99%), Gaps = 1/545 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgagcccc-ccaaaaagaaccagaaaagatgtaattgttcagagaaaaatatg 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaattcttgagccccaacaaaaagaaccagaaaagatgtaattgttcagagaaaaatatg 486
Query: 64 gtgcactgtgagatgataaaacgttctttataaactgctacacacaatcttattctcaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtgcactgtgagatgataaaacgttctttataaactgctacacacaatcttattctcaaa 426
Query: 124 agttcctctctcaaaccagagactgtgtcagtggaatcttaactactaaccaaagatgct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agttcctctctcaaaccagagactgtgtcagtggaatcttaactactaaccaaagatgct 366
Query: 184 aggatagagccaccaatccatgagctgaacctccgctccaccgtcgtgttgtttgcaatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aggatagagccaccaatccatgagctgaacctccgctccaccgtcgtgttgtttgcaatc 306
Query: 244 agtttcaaccgcatactctacaacagatgaagaagaagcgttaggatactgggatagcca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agtttcaaccgcatactctacaacagatgaagaagaagcgttaggatactgggatagcca 246
Query: 304 caaccgccaacctgggaattcagtgctgaaaaacctctagaggcatggtggaacatgtac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 caaccgccaacctgggaattcagtgctgaaaaacctctagaggcatggtggaacatgtac 186
Query: 364 ttaatcctagcacttgggatacagagacaggcagatctcttagttccaggccagtatggc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttaatcctagcacttgggatacagagacaggcagatctcttagttccaggccagtatggc 126
Query: 424 ctacatagtgagtttgaggtcaaataggactacaacagcatccaacactcacacccactc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctacatagtgagtttgaggtcaaataggactacaacagcatccaacactcacacccactc 66
Query: 484 accctgtctgtctctacacacacggaaaaacaaattagtttcacatagtgtcaaatggct 543
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 65 accctgtctgtctctacacacacggaaaaacaaattagtttcacatggtgtcaaatggct 6
Query: 544 aagct 548
|||||
Sbjct: 5 aagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space: 686556
Effective search space used: 686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_a05.g1 MSMg01no139_a05.g1 CHROMAT_FILE:
MSMg01no139_a05.g1 PHD_FILE: MSMg01no139_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:15 2005
(632 letters)
>mm_chr3_32529151_32530182
Length = 1032
Score = 1172 bits (606), Expect = 0.0
Identities = 624/630 (99%), Gaps = 1/630 (0%)
Strand = Plus / Plus
Query: 4 ccccagggaccagcg-tccgcattctcatgcatccagagtctttaatgggtggtgctgtc 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccccagggaccagcggtccgcattctcatgcatccagagtctttaatgggtggtgctgtc 262
Query: 63 taccacttctaagtgctcactggaaagcccagccctgactcagagccacagtattagcac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taccacttctaagtgctcactggaaagcccagccctgactcagagccacagtattagcac 322
Query: 123 agtaataatggactaaatagaaaatgctttctcttttctctaaaggggaggaatcaatta 182
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 323 agtaataatggactaaatagaaactgctttctcttttctttaaaggggaggaatcaatta 382
Query: 183 tgaaagccaaatatcagagaacagtgtctaaaataccctagaacaggaaagaattaagga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaaagccaaatatcagagaacagtgtctaaaataccctagaacaggaaagaattaagga 442
Query: 243 acaatcttctttaaagcagaattctttttaaaaatatttttaaatatactactttattaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acaatcttctttaaagcagaattctttttaaaaatatttttaaatatactactttattaa 502
Query: 303 ttctttgagtacttagtaatgaatcctatgtatttttgatcaaactcacttccactcccc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttctttgagtacttagtaatgaatcctatgtatttttgatcaaactcacttccactcccc 562
Query: 363 ctcttccctcttcccagatctatcttcccatccaacaccacttcaggtccttctatacac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctcttccctcttcccagatctatcttcccatccaacaccacttcaggtccttctatacac 622
Query: 423 acgggtatggggccatctcctggagcatgatggacccactaggtaccacactcttaaaga 482
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 623 acgggtatggggccatctcctggagcatgatggacccactaggtaccatactcttaaaga 682
Query: 483 aaatggactccctcccatcaggaataataaactattaagagttcctcagttaggggtggc 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaatggactccctcccatcaggaataataaactattaagagttcctcagttaggggtggt 742
Query: 543 atttcattgagcctgctcccctactagctaggactttgaatagcttgaccttctgcagaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atttcattgagcctgctcccctactagctaggactttgaatagcttgaccttctgcagaa 802
Query: 603 cttatgcaagcagccatagcttctgagagt 632
|||||||| |||||||||||||||||||||
Sbjct: 803 cttatgcaggcagccatagcttctgagagt 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
