XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAATCCGCGGAATT
CCTTCATTGGGCCCCAGGGACCTACAGTGAGGAGGGAATCTGGCCCTTCT
TCAACTCAACTGCGTGTTTCAAATTGAGTAAGATTGTTTTTAAAAAATTG
ATTCTCCAGCTTAGAGTCTGAAAGTAGTGTGCACTCACACCCCTCCGCCC
CCATATGTGTGTGGAGCCCCCATATGTGTGTGGAGATGTACCCACGTCTG
TACACATGTGGACTTGGGTGTGGAAGTCAGAGAACAACCTGGGTGTTGTT
CATCGGGTGCCAGGAACTTTGTTTTTTTGGGATAGCGTCTTTCACTGGAA
GTCACCAAATAGCCTAAGGTGTCTGGCCAGCAAGCCTCAGGAATCTACCT
GTCTCTCTCTCCAGCTATGACATTACAAGTCTACATCACTATACTTGACA
TTTTTAACATGGGTCCTTCTCCACAATAAACACTAGTTTGGGGCTAGGTA
CTGAAGTAGCTCCCTTAGTAGCATATTCGGTTAGCATGCACAAAGCCTCC
AGACATCATGGCGAACAGCTGTCACCTTACCACCTCAGGAAGGAGGAGGA
AAAATCAAAAGTTCAAGACCACCCTCATCTGTGTAGTGAGCTCAGGACCA
GCCTGGGAAACCTGAATCTTTGCCTCAAAACAAACCCAGAAACATTAGCT
TAGTTTTCTGCAGGGTGTTGTGTAC

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCTCTGCCCATTTATCATTTATATGGGGC
GGGGGGTGCTACTGAATCCAGCCACTTTGAAGGTGTTTATCAGCTTAGGA
GTTCCTTAGTAGAACTTGGGGGGAGGGGCATTGCTTTATATGCACATGCA
TATAATCTTCAAATAGCAATACTTTGACTTCCTCCTTTCTAATTTATATC
CTCTTGATCTCCTTTAGTTGTCTTATTGATCTAGCTAAAACTTCAAGCAC
TATACTGAATAGACAGGGGAAAAGTAGGTAGCTCTGTCTTGTCCCTAATT
TCAGTGGAATTGCTTTAAGTTTATCTTCATTTAATTTGATATTGGCTATT
GGCTGGCTGTAAAATCCATGTATTATGTTGAGATATGTGCTTTATATCCC
TGATCTCTCTAGGACTTTTATCATGAAAGGGTGTTGGATTTTTGTCAAAG
GCTTTTTCAGCATTTATTGAGATGAACATGTGGGGATTTTTCTTTTCCAA
TTTGTTTGTGTGGTGGAACCATTCCTGCATCTGTGAGATGAAGCCTACTT
GATCATGGTAGATGATTTTTTTGATGCGTTCTTGGAATCAGTTTGCAAGC
ATTTCACTGAGTTTCTTTTTTTCCTCAAGGTCCATGAGAGCCCTCGTTCT
GATCCCCTTTTTTGCG

Query= MSMg01no139_b09.b1 MSMg01no139_b09.b1 CHROMAT_FILE:
MSMg01no139_b09.b1 PHD_FILE: MSMg01no139_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:21 2005
         (682 letters)



>mm_chr3_51919485_51920565
          Length = 1081

 Score = 1160 bits (600), Expect = 0.0
 Identities = 657/676 (97%), Gaps = 3/676 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccttcattgggccccagggacctacagtgaggagggaatctggcccttcttcaac 65
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 206 gaattccttcattgggccccagggacctacggtgaggagggaatctggcccttcttcaac 265

                                                                       
Query: 66  tcaactgcgtgtttcaaattgagtaagattgtttttaaaaaattgattctccagcttaga 125
           |||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||
Sbjct: 266 tcaactgcgtgtttcaaattgagtaagatt-tttttttaaaattgattctccagcttaga 324

                                                                       
Query: 126 gtctgaaagtagtgtgcactcacacccctccgcccccatatgtgtgtggagcccccatat 185
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 gtctgaaagtagtgtgcactcacacccctccacccccatatgtgtgtggagcccccatat 384

                                                                       
Query: 186 gtgtgtggagatgtacccacgtctgtacacatgtggacttgggtgtggaagtcagagaac 245
           |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct: 385 gtgtgtggagatgtacccacgtgtgtacacacgtggacttgtgtgtggaagtcagagaac 444

                                                                       
Query: 246 aacctgggtgttgttcatcgggtgccaggaactttgtttttttgggatagcgtctttcac 305
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 aacctgggtgttgttcatcgggtgccaagaactttgtttttttgggatagcgtctttcac 504

                                                                       
Query: 306 tggaagtcaccaaatagcctaaggtgtctggccagcaagcctcaggaatctacctgtctc 365
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggaagtcaccaaatagcctagggtgtctggccagcaagcctcaggaatctacctgtctc 564

                                                                       
Query: 366 tctctccagctatgacattacaagtctacatcactatacttgacatttttaacatgggtc 425
           ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 565 tctctccagctatgagattacaagtctacatcactacacttgacatttttaacatgggtc 624

                                                                       
Query: 426 cttctccacaataaacactagtttggggctaggtactgaagtagctcccttagtagcata 485
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttctacacaataaacactagtttggggctaggtactgaagtagctcccttagtagcata 684

                                                                       
Query: 486 ttcggttagcatgcacaaagcctccagacatcatggcgaacagctgtcaccttaccacct 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcggttagcatgcacaaagcctccagacatcatggcgaacagctgtcaccttaccacct 744

                                                                       
Query: 546 caggaaggaggaggaaaaatcaaaagttcaagaccaccctcatctgtgtagtgagctcag 605
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 745 caggaagaaggaggaaaaatcaaaagttcaagaccaccctcatctgtgtagtgagcttag 804

                                                                       
Query: 606 gaccagcctgggaaacctgaatctttgcctcaaaacaaacccagaaacattagcttagtt 665
           || |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 805 gatcagcctgggaaacctgaatctttgcctcaaaacaaacccagaaacattagttt-gtt 863

                           
Query: 666 tt-ctgcagggtgttg 680
           || |||||||||||||
Sbjct: 864 tttctgcagggtgttg 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1081
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1071
Effective search space:   719712
Effective search space used:   719712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)