NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTTCATCGCGGCTATCTTCTTTAGGTTTGTTGAAAGATTA
CTTTCTTTTTCTCCAGCTTAGTTTCCCTCTTTGTGTTGGAATTTTTTTCC
TTTATTATCGTTTGAAGGGCTGGATTTGTGGAAAGATAATGTGTGAATTT
GGTTTTGTCGTGGAATACTTTGGTTTTTCCATCTATGATAATTGAGAGTT
TTGCTGGGTATAGTAGCCTGGGCTGGCATTTGTGTTCTTTTTTGGTCCGT
ATGACATCTGCCCAGGATCTTCTGGCTTTCATAGTCTCTGAGGAGAAGTC
AGGTGTAATTCTGATAAGTCTGCCTTTATATGCTACTTGACCTTTTTCAC
TTACTGCTTTTAATGTTCTTTCTTTGTTTTGTGAATTTAGTGTTTTGATT
ATTGTGTGAAGGGAGGAATTTCATTTCTGTTCCAAACTATTTGGAGTTCT
GTAGGCTTCTTGTATGTTCATGGGCATTTCTTCTTTAGGTTGGGGAAGTT
TTCTTCTCTAATTCTGTTGAAGACAGTTATTGTTCCTTTAAGTTGCAAAT
CTTCCCTCTCGTCTGTACTTATTATCCTTATTTTTGGCCCTTTCAACGTA
TCCTGGATTTCCTGCATGTTCTTCCTTTATTCACCTTTTTGCTTTTTGCA
TT

NNCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGTGTGCACCCAGAAACACAGTAC
TTTACTTGTTCAAATCTCTGTGACCCTATCAGTTTTCAGTTCCCAGAGGC
CTTATTTCTGACCCAAGAGTTGCAGGCTGTAATACAGAGGTAATCAGATT
GCAGTAAGGAGCATGGCTACACATGGGACCAGGCAGCCTAATAGAAACCT
TTAGTCTTTGTGGTAAGTCAGAGTTATGCATGGAGGCCCAACCCTTGGAA
ATTGTGATCCACTAAGTACACCAGTCTAATGGTGACTGACATTAATGACA
CCTTTCTCTGAAGTCAGAGGAAATGGGAAGAGTGTGGAAGAGCTAGGATA
CAAACTATTTATCTCAAGATGAGATTTGACCAATGTCGCCTCTGCTCATA
CTCCAGTAGCTACAATTCAATTCCTGTCTATACAAGCTATGAGGGAGATT
GGGAAATGAATTCTGGCTAAGTTCTAGGAAGGGTGGCAGCGTAATTTTCA
TAAATAGCTATCAGCATCTATACCTGTCTTCCTTACATATCTGTTGTTGT
GTCAACACCGACCAAAGCAACATGGGGGAGAAAGGATTCATTTGGTTTAC
ATATCCTGATTACAGTCCATCAGAGGGAAGCGACAGCAGGGACAAAAGCA
AA

Query= MSMg01no139_e18.g1 MSMg01no139_e18.g1 CHROMAT_FILE:
MSMg01no139_e18.g1 PHD_FILE: MSMg01no139_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:39 2005
         (621 letters)



>mm_chr3_56893465_56894486
          Length = 1022

 Score =  986 bits (510), Expect = 0.0
 Identities = 608/676 (89%), Gaps = 55/676 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgtgcacccagaaacacagtactttacttgttcaaatctctgtgaccctatcagttt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtgtgcacacagaaacacagtactttacttgttcaaatctctgtgaccctatcagttt 260

                                                                       
Query: 61  tcagttcccagaggccttatttctgacccaagagttgcaggctgtaatacagaggtaatc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tcagttcccagaggccttatttctgacccaagagctgcaggctgtaatacagaggtaatc 320

                                                                       
Query: 121 agattgcagtaaggagcatggctacacatgggaccaggcagcctaatagaaacctttagt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 agattgcagtaaggagcatggctacacatgggaccaggcagcataatagaaacctttagt 380

                                                                       
Query: 181 ctttgtggtaagtcagagttatgcatggaggcccaacccttggaaattgtgatccactaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ctttgtggtaagtcagagttatgcatggaggcccaacccttggaaactgtgatccactaa 440

                                                                       
Query: 241 gtacaccagtctaatggtgactgacattaatgacacctttctctgaagtcagaggaaatg 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gtacaccagtctaatggtgactgacatttatgacacctttctctgaagtcagaggaaatg 500

                                                                       
Query: 301 ggaagagtgtggaagagctaggatacaaactatttatctcaagatgagatttgaccaatg 360
           |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 501 ggaagagtgtggaagatctaggatacaaactatttatgtcaagatgaaatttgaccaatg 560

                                                                       
Query: 361 tcgcctctgctcatactccagtagctacaattcaattcctgtctatacaagctatgaggg 420
           || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 tcacctctgctcatactccagtagctacaattcaattcctgtctatacaaactatgaggg 620

                                                                       
Query: 421 agattgggaaatgaattctggctaagttctaggaagggtggcagcgtaatttt-cataaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 agattgggaaatgaattctggctaagttctaggaagggtggcagcgtaatttttcataaa 680

                                                                       
Query: 480 tagctatcagcatct--------------------------------------------- 494
           |||||||||||||||                                             
Sbjct: 681 tagctatcagcatctgctatagaaggaatttaaaaagctaccagaactcttctgggtaca 740

                                                                       
Query: 495 ---------atacctgtcttccttacatatctgttgttgtgtcaacaccgaccaaagcaa 545
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taggaagacatacctgtcttccttacatatctgttgttgtgtcaacaccgaccaaagcaa 800

                                                                       
Query: 546 catgggggagaaaggattcatttggtttacatatcctgattacagtccatcagagggaag 605
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 801 cttgggggagaaaggattcatttggtttacatatcctaattacagtccatcagagggaag 860

                           
Query: 606 cgacagcagggacaaa 621
           ||||||||| ||||||
Sbjct: 861 cgacagcagagacaaa 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space:   618332
Effective search space used:   618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)