Query= MSMg01no139_i16.b1 MSMg01no139_i16.b1 CHROMAT_FILE:
MSMg01no139_i16.b1 PHD_FILE: MSMg01no139_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:58 2005
(534 letters)
>mm_chr3_123086311_123087244
Length = 934
Score = 978 bits (506), Expect = 0.0
Identities = 524/530 (98%)
Strand = Plus / Minus
Query: 5 gaattcctcctgccgccacttacagttgacattactgggtttaagctgttagtagatttt 64
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaattcctccagcggccacttacagttgacattactgggtttaagctgttagtagatttt 675
Query: 65 attaaaagcttagctttaatgaagctgagtgcatctctgtgagagcaggagatacatgta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 attaaaagcttagctttaatgaagctgagtgcatctctgtgagagcaggagatacatgta 615
Query: 125 gtacataaagtggttcacatgaagggctttgctttctgtgttactgcttctgatgccaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtacataaagtggttcacatgaagggctttgctttctgtgttactgcttctgatgccaac 555
Query: 185 ttgtatttcattcaccattggctacagggaatcatcctaatttcaaatttaaccaaatgc 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttgtatttcattcaccattggcgacagggaatcatcctaatttcaaatttaaccaaatgc 495
Query: 245 gtaaaatactttccggctgacaaagtcattcttaattaaaatgattttcttaccattcac 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtaaaatactttccgtctgacaaagtcattcttaattaaaatgattttcttaccattcac 435
Query: 305 ttagagttgatcttgcaagcctattgatagtgtgctaagggtggtgttgcttttataaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttagagttgatcttgcaagcctattgatagtgtgctaagggtggtgttgcttttataaaa 375
Query: 365 cacttgatttgttgaaattagcaacacattttgggcgtgtgaacaatgcgttgtgaccta 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tacttgatttgttgaaattagcaacacattttgggcgtgtgaacaatgcgttgtgaccta 315
Query: 425 actttgggttcttgcttcctagttgggagctgagagtgcggatagcattggtgctgtgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 actttgggttcttgcttcctagttgggagctgagagtgcggatagcattggtgctgtgtt 255
Query: 485 aaatagcaaagatgaacagagggagattgctgaatccagagaaacctgca 534
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 254 aaatagcaaagatgaacagagggagattgctgaaaccagagaaacctgca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_i16.g1 MSMg01no139_i16.g1 CHROMAT_FILE:
MSMg01no139_i16.g1 PHD_FILE: MSMg01no139_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:59 2005
(633 letters)
>mm_chr3_122937232_122938260
Length = 1029
Score = 1120 bits (579), Expect = 0.0
Identities = 618/633 (97%), Gaps = 6/633 (0%)
Strand = Plus / Plus
Query: 1 agagctctcttccaaccctttcatctctctgccctccc-aacaggagctggaggtgagga 59
||||||| ||||||| |||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 201 agagctcccttccaatcctttcatctctctgccctcccaaacaggagctcgaggtgagga 260
Query: 60 caccatgtcccaaaagaactaaaagacctgggacgtctgaggaactttctagatctaagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccatgtcccaaaagaactaaaagacctgggacgtctgaggaactttctagatctaagt 320
Query: 120 ggctttcatcttccagttctgtgctcacaacttccatttctgcacctctcactaggtggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctttcatcttccagttctgtgctcacaacttccatttctgcacctctcactaggtggc 380
Query: 180 aggattcaactaccaaagaaagaatgttccaatagatgctcgagagcagtaattttcaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aggattcaactaccaaagaaagaatgttccaatagatgctcgagagcagaaattttcaaa 440
Query: 240 gaaacatcggtcttcacagggaacatttatgaaagagaaaaaaataatatagctacaaag 299
||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct: 441 gaaacgtcggtcttcacagggaacatttatgaaag-ggaaaaaagaatatagctacaaag 499
Query: 300 gcggtgacccatgggcttcatagaggcctagattcattttagctatagctatgcaacaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcggtgacccatgggcttcatagaggcctagattcattttagctatagctatgcaacaag 559
Query: 360 aaagtaacctttgatgccttccaataccggcacagaattctacagttccatgttaacatt 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 aaagtaacctttgatgccttccaatactggcacagaattctacagttccatgttaacatt 619
Query: 420 tgatgaaaagttttttactttcttgctttctaacttcattttagctgaatgccagttcta 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 tgatgaaaagttttttactttcttgctttctaacttcattttagctgaatgccagttcga 679
Query: 480 atctaaatgagattatgggtattatgctaaactgaaaatcaatctaatgtgacaaagata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atctaaatgagattatgggtattatgctaaactgaaaatcaatctaatgtgacaaagata 739
Query: 540 aacaacgtattaaatagctattaggtgcaccagaaagatagctgtaattaatgcattgta 599
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 740 aacaacgtattaaatagctattaggtgcaccagaaag----ctgtaattaatgcattgta 795
Query: 600 aagaatctgtgaatacactgacgagactcagca 632
|||||||||||||||||||||||||||||||||
Sbjct: 796 aagaatctgtgaatacactgacgagactcagca 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1029
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1019
Effective search space: 634837
Effective search space used: 634837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
