Query= MSMg01no139_n14.b1 MSMg01no139_n14.b1 CHROMAT_FILE:
MSMg01no139_n14.b1 PHD_FILE: MSMg01no139_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:22 2005
(548 letters)
>mm_chr3_19972693_19973640
Length = 948
Score = 862 bits (446), Expect = 0.0
Identities = 468/478 (97%), Gaps = 6/478 (1%)
Strand = Plus / Minus
Query: 5 gaattcagcgatccacccacttcagcctcttgagtactgagataaagatatgcaccacca 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcagcaatccacccacttcagcctcttgagtactgagataaagatatgcaccacca 419
Query: 65 tagaaattggtact-----tta-ataagcaacatataaattctggttaaaaacactgatc 118
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 418 tagaaattggtacttataattatataagcaccatataaattctggttaaaaacactgatc 359
Query: 119 gtgtctcaaaaagatcagctattaccaggtacttgtaaccacttttagtgagatacaaag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtgtctcaaaaagatcagctattaccaggtacttgtaaccacttttagtgagatacaaag 299
Query: 179 ttcgacagaaagtaaaatgagatggctcaatgggtaagagcactgactgctcttccgaag 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttctacagaaagtaaaatgagatggctcaatgggtaagagcactgactgctcttccgaag 239
Query: 239 gtcctgagttcaaatcccaggaaccacatggtggctcacagccacctgtaatgagctcta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtcctgagttcaaatcccaggaaccacatggtggctcacagccacctgtaatgagctcta 179
Query: 299 atgccctcttctggcacatctgaagtcagctacagtgtacttatgtataataataaataa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atgccctcttctggcacatctgaagtcagctacagtgtacttatgtataataataaataa 119
Query: 359 atctttgggctggagcaagcagtgactgagcgaacagagttgacccaagtgagctgggcc 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 118 atctttgggctggagcaagcagtgactgagcgaacagagttgacccaagtgagcagggcc 59
Query: 419 gaccagagcaagtggggttgatcagagcaagcagaggtcctaaaaattcaattcccaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 gaccagagcaagtggggttgatcagagcaagcagaggtcctaaaaattcaattcccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_n14.g1 MSMg01no139_n14.g1 CHROMAT_FILE:
MSMg01no139_n14.g1 PHD_FILE: MSMg01no139_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:22 2005
(589 letters)
>mm_chr3_19887354_19888342
Length = 989
Score = 1085 bits (561), Expect = 0.0
Identities = 582/589 (98%)
Strand = Plus / Plus
Query: 1 ctagaaagcaataaaatgcatggtatgagacactattctaagccaccttccttttttacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagaaagcaataaaatgcatggtatgagacactattctaagccaccttccttttttacc 260
Query: 61 cttttcttctttcaaagaaaatcatattgtagggctgttttatttaaaaatattgtgatg 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cttttcttctttcaaagaaaatcatattgtagggatgttttatttaaaaatattgtgatg 320
Query: 121 taaaattctgttcagaaccaaattgtactatgtttaaagtcttcactaatttttctccca 180
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 321 taaaattctgttcagaaccaaattgtactatgtttaaagtctttactaatttatctccca 380
Query: 181 attccaagccctccttcccttctaagtaaatccgcaatcaggattaaggctcttcatata 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 attccaagccctccttcccttctaagtaaatctgcaatcaggattaaggctcttcatata 440
Query: 241 aagtaacttgaaaagtagcagtgatgccattgaacttgaactgttttccccacccatagc 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtaacttgaaaagtagcagtgataccattgaacttgaactgttttccccacccatagc 500
Query: 301 tctgtcatgttaacctagcaatatttcctgttactgctatgggttaagattattctgaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtcatgttaacctagcaatatttcctgttactgctatgggttaagattattctgaaa 560
Query: 361 tatatcacatttccctcagctattaatgggaaaatgtttggaaacctacaaggcctcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatcacatttccctcagctattaatgggaaaatgtttggaaacctacaaggcctcaca 620
Query: 421 atgcacgtgaaagatgaagtcaactggtatgtgatgggaatgggtaatgaaatagacctg 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 atgcacgtgaaagatgaagtcaactggtatgtgatgggaatgggcaatgaaatagacctg 680
Query: 481 cacactgtacacttccatggccacagcttccaatacaaggtaagagctgccgcagcactc 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacactgtacacttccacggccacagcttccaatacaaggtaagagctgccgcagcactc 740
Query: 541 agtcctactctgcttaacatgttctgactcaaggcaacaatgcattcca 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtcctactctgcttaacatgttctgactcaaggcaacaatgcattcca 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
