BAC Information

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BAC

Clone NameMSMg01-139N20
Chromosome3 (Build37)
Map Location 88,277,044 - 88,447,294
singlet/doubletdoublet
Overlap geneLOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2
Upstream geneEtv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a
Downstream geneRxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139N20.T7 (MSMg01no139_n20.b1)MSMg01-139N20.TJ (MSMg01no139_n20.g1)
ACCAG345158AG345159
length710710
length of high quality
(start - end)		637 (72 - 708)606 (73 - 678)
definitionCHROMAT_FILE: MSMg01no139_n20.b1 PHD_FILE: MSMg01no139_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:24 2005CHROMAT_FILE: MSMg01no139_n20.g1 PHD_FILE: MSMg01no139_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,446,658 - 88,447,294)(88,277,044 - 88,277,673)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAATCCGCGGA
ATTCCCATCTCTCCCCCTGTGGTGACCTCAACTGATTTCCATTCCGATCC
TACAGAAATAAACAAGAATGGGGAGTCAGCAGGCACAGACCTGGGGGCCT
TCCTCAGCAGCTGTCTATCCACAGGCCAGCCAGCTGTGCCCTTTCTTTGG
CCACTCCCTGGCTCTCCAAGAACCCACCTTCTGGCTGGAATCTGAGTCTG
CTCTACAGAGTTCAATGGAGCCATTGAAGGTTCTGGCCTCTCCATCTGTT
GCAGAAAAGAGAAGGAGGAGCAGAATATACTTCTTCGGGGGCTCCGGGAC
CCCCTCCCTCCCTGATTAAGCCACTCCCCTCTTGCGTTCATGCCCCGTAC
TCACTGGCAGTGACCCCAGGACAGCTACCGCTGTCAGAGTCCAAGGGTAA
GGCTGGTTCTCGGGATGTCGTTGGCAGGTCCACACATGGGCCCAACAGCA
GGTCTTTCAGGCCTTCCACTGAAGGGAAAGAGGAGGAGGTGGGGACAGGA
GACAAAACCAGTGGGGGTCCACCCAACACACACCATCCAAGTATTTAGGG
GGTTCACATTTGGGTAGTGGGGCTTCAGTCAGCCATGTGGCATCCAAGGG
ACATCAAAAATGTTCAAGAGTCATCTCAGCCTGCCCGGGGGAGACGCATC
TGACAGCAAG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTCGGGGCAAAGAGCTGGCTGCTGACA
GCTGTCAAAACAGCAGCTGACTTAAAGGAAACAAAAGACCCAGCCGCACA
AACCCCTGCTGAACAGAATTGGCAGTCAGAGCCTAAGGCACTGAAACAAG
CCTGCGCAGACCCACAGCAAGATTGAGGGCTCTTCGCTGGTTGGTCCTAA
GTCTCACCTTATTTGCATACCCCATTCAGCCAATGAGACCCAGGTGGTTT
CTCAGTAAATTCAGACATACCTTAGGCTTCAAGACACTTTCTCGTCTGAG
CTTTATAATGAAAGGCACAGGTGATTTTAGCGCTCAGCCCTCACACATAC
CCTTGCTTCAAGACTCACCAAAGGCAGACCAACTTCCAGGACTCAACCTT
TAACAGCTGCCGCAGGCAGGATAACTCATTCCATTCCTTCCTCAGCCACC
AGAGACCTAAGATTCCAGCCTTCAAGATCCATCAGAGACAAAGAAATCTG
TTTCTGTTGCTTCCCTCAGTCTGTAAACATGGTCTGAGAGGAACTGTCTC
AGCTGGTACCCCAAAGCCCTCAGAGAAGTTCTCAACTATAGCAATCCCTC
ACTTGGCACGTGCCACCACCTCTTGCCTGGCACACCAGAAGTCTGCTGAT
CCAAGATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_n20.b1 MSMg01no139_n20.b1 CHROMAT_FILE:
MSMg01no139_n20.b1 PHD_FILE: MSMg01no139_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:24 2005
         (637 letters)



>mm_chr3_88446458_88447494
          Length = 1037

 Score = 1170 bits (605), Expect = 0.0
 Identities = 629/637 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacctcaactgatttccattccgatcctacagaaataaacaagaatggggagtcagca 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gtgatctcaactgatttccattccgatcctacagaaataaacaagaatggggagtcagca 778

                                                                       
Query: 61  ggcacagacctgggggccttcctcagcagctgtctatccacaggccagccagctgtgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ggcacagacctgggggccttcctcagcagctgtctatccacaggccagccagctgtgccc 718

                                                                       
Query: 121 tttctttggccactccctggctctccaagaacccaccttctggctggaatctgagtctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 717 tttctttggccactccctggctctccaagaacccaccttctggctggaatccgagtctgc 658

                                                                       
Query: 181 tctacagagttcaatggagccattgaaggttctggcctctccatctgttgcagaaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tctacagagttcaatggagccattgaaggttctggcctctccatctgttgcagaaaagag 598

                                                                       
Query: 241 aaggaggagcagaatatacttcttcgggggctccgggaccccctccctccctgattaagc 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 597 aaggaggagcagaatatacttcttcgggggctccgggaccccttccctccctgattaagc 538

                                                                       
Query: 301 cactcccctcttgcgttcatgccccgtactcactggcagtgaccccaggacagctaccgc 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cactcccctcttgctttcatgccccgtactcactggcagtgaccccaggacagctaccgc 478

                                                                       
Query: 361 tgtcagagtccaagggtaaggctggttctcgggatgtcgttggcaggtccacacatgggc 420
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 477 tgtcagagtccaagggtaaggctggttctcgggatgtcataggcaggtccacacatgggc 418

                                                                       
Query: 421 ccaacagcaggtctttcaggccttccactgaagggaaagaggaggaggtggggacaggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccaacagcaggtctttcaggccttccactgaagggaaagaggaggaggtggggacaggag 358

                                                                       
Query: 481 acaaaaccagtgggggtccacccaacacacaccatccaagtatttagggggttcacattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acaaaaccagtgggggtccacccaacacacaccatccaagtatttagggggttcacattt 298

                                                                       
Query: 541 gggtagtggggcttcagtcagccatgtggcatccaagggacatcaaaaatgttcaagagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gggtagtggggcttcagtcagccatgtggcatccaagggacatcaaaaatgttcaagagt 238

                                                
Query: 601 catctcagcctgcccgggggagacgcatctgacagca 637
           |||||||||||||||| |||||||||||| |||||||
Sbjct: 237 catctcagcctgcccgagggagacgcatccgacagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no139_n20.g1 MSMg01no139_n20.g1 CHROMAT_FILE:
MSMg01no139_n20.g1 PHD_FILE: MSMg01no139_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:24 2005
         (606 letters)



>mm_chr3_88276868_88277873
          Length = 1006

 Score = 1098 bits (568), Expect = 0.0
 Identities = 603/630 (95%), Gaps = 24/630 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcggggcaaagagctggctgctgacagctgtcaaaacagcagctgacttaaaggaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cctcggggcaaagagctggctgctgacagctgtcaaaacagcagctgacttaaaggaaac 236

                                                                       
Query: 61  aaaagacccagccgcacaaacccctgctgaacagaattggcagtcagagcctaaggcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aaaagacccagccgcacaaacccctgctgaacagaattggcagtcagagcctaaggcact 296

                                                                       
Query: 121 gaaacaagcctgcgcagacccacagc------------------------aagattgagg 156
           ||||||||||||||||||||||||||                        ||||||||||
Sbjct: 297 gaaacaagcctgcgcagacccacagcaactgcgcacagcaggaaacttttaagattgagg 356

                                                                       
Query: 157 gctcttcgctggttggtcctaagtctcaccttatttgcataccccattcagccaatgaga 216
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gctcttcactggttggtcctaagtctcaccttatttgcataccccattcagccaatgaga 416

                                                                       
Query: 217 cccaggtggtttctcagtaaattcagacataccttaggcttcaagacactttctcgtctg 276
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 417 accaggtggtttctcagtaaattcagacataccttaggcttcatgacactttctcgtctg 476

                                                                       
Query: 277 agctttataatgaaaggcacaggtgattttagcgctcagccctcacacatacccttgctt 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 agctttataatgaaaggcacaggtgattttagcgctcagccctcacacatacccttgctt 536

                                                                       
Query: 337 caagactcaccaaaggcagaccaacttccaggactcaacctttaacagctgccgcaggca 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 caagactcaccaaaggcagaccaacttccaggactcaacctttaacagctgccgcaggca 596

                                                                       
Query: 397 ggataactcattccattccttcctcagccaccagagacctaagattccagccttcaagat 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ggataactcattccattccttcctcagccaccagagacctaagattccagccttcaagat 656

                                                                       
Query: 457 ccatcagagacaaagaaatctgtttctgttgcttccctcagtctgtaaacatggtctgag 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ccatcagagacaaagaaatctgtttctgttgcttccctcagtctgtaaacatggtctgag 716

                                                                       
Query: 517 aggaactgtctcagctggtaccccaaagccctcagagaagttctcaactatagcaatccc 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aggaactgtctcagctggtaccccaaagccctcagagaagttctcaactatagcaatccc 776

                                         
Query: 577 tcacttggcacgtgccaccacctcttgcct 606
           ||||||||||||||||||||||||||||||
Sbjct: 777 tcacttggcacgtgccaccacctcttgcct 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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