BAC Information

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BAC

Clone NameMSMg01-140A10
Chromosome3 (Build37)
Map Location 118,831,763 - 118,832,077
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140A10.T7 (MSMg01no140_a10.b1)MSMg01-140A10.TJ (MSMg01no140_a10.g1)
ACCAG345279AG345280
length726724
length of high quality
(start - end)
319 (43 - 361)314 (73 - 386)
definitionCHROMAT_FILE: MSMg01no140_a10.b1 PHD_FILE: MSMg01no140_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:37 2005CHROMAT_FILE: MSMg01no140_a10.g1 PHD_FILE: MSMg01no140_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCTATGATAGATGTCTTTAACTGGGAACTTACATGGCTTTTTTATTTTTC
TAAATGCCATGTTAAATTTTGATAAAGCTATATATTCTTGAAATTTGTAT
TGATTTTGTCAGGAACCCTCAAAGTCATCTAGTGCCCTGCAGGTTACTAG
GATCAACAGGAATTATAATTGGGTTGGATGAAGACAAATAAATATTGTTC
TAGAATTAATATGCCTTCTTGTGAGAAATCACCCTGCTTACTTAGAGATT
AATAAAGAAAAAATCTCTTTAATATCATGTGTCTGGCTCTGGCTAAGTTC
CAAAGAGGAGCAGGCCCCAAATAGCACATTTTACTAACTTATATACATCT
TAGATTTATGCACTTATCATAGGGTGCAATTTTTAAGTATATTGCAGGTC
TGAATCCCAAATTACACTTTCAACAATTTCAGCAGAGATAGGAGACTGGA
AATCTGGCTACTTATGTAGATAATTTACACATTACATATATTGCCAGGAT
CTATTTGCGTTGCCCCGTTATTCGTCTGTATGTTTTTATTTACCCCTTCC
TTCTTTTCTTTTTTTCTTTTCCCTTTTTCTTTTTCCTCCCTTTTTTTATC
CTTTTTACCCGTTTCCATATTCCCCTTTTTACCCCTTTTTTCCTTTTTCC
TTTTTTACCCCCCCTTTTTTCCTCCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCATTCCAATAAAATATATTCCTAGGTATTAGGCAC
AGATACTTAATAATGGGAATGGTCTGAGGATTATGAGTGAGTCCATAGGA
GGGAGAAAAGCAGTCTTCTACCAAGACCTGCTTAATCTCCTGGAATGGAG
AAAGAGAACAAGGAAAGGTCACAGCAAGAAAAAACAGAAAATGAGCCTGC
AGAATTTGATGTGGCAGAGAGAGGAGAGAGTAAAGGTCAGATTTGCCTAC
CTGTTTTGCTGGTTTACTTTCTTCTCTGACTGGGATGTTTCTAGGGAACA
CCTGCTGTAGTCGGGGACTGGAAAATCATTTTGGCTGGGGAGGAAGGTTA
GAGGACAAGTTTTGCATGGTTCACTGTAGATGCTGAAACACACGCGTTCT
CACAGCACGTGTTTCGCAACTGATTTGCATCCGAAACTGGCTGCACTACT
TTTGAGAATGAGAGAATTACCGCAACACCGATGTCTACTGCCTCCTCGGA
GCGCTCATCACTCTCTCAGTCTACGTCTGCCGTACTTCTCCTCTCTCTCT
ACTGCATCTTGTATGCTTGCCACCTCATACTACCACTTCGCTGTCATGAT
TTACATCATCCTCTGTTCTTCCTTCTACTCCTCCTCCTCCCTTTTCTCTA
CCTTCTCCTTCCTCTTCTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_a10.b1 MSMg01no140_a10.b1 CHROMAT_FILE:
MSMg01no140_a10.b1 PHD_FILE: MSMg01no140_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:37 2005
         (319 letters)



>mm_chr3_118831559_118832277
          Length = 719

 Score =  557 bits (288), Expect = e-163
 Identities = 309/316 (97%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgatagatg-tctttaactgggaacttacatggcttttttatttttctaaat 63
           ||||||||||||||||| || |||||||||||||| |||||| |||||||||||||||||
Sbjct: 519 gaattctatgatagatgctc-ttaactgggaacttgcatggcctttttatttttctaaat 461

                                                                       
Query: 64  gccatgttaaattttgataaagctatatattcttgaaatttgtattgattttgtcaggaa 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 460 gccatgttaaattttgataaagcaatatattcttgaaatttgtattgattttgtcaggaa 401

                                                                       
Query: 124 ccctcaaagtcatctagtgccctgcaggttactaggatcaacaggaattataattgggtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ccctcaaagtcatctagtgccctgcaggttactaggatcaacaggaattataattgggtt 341

                                                                       
Query: 184 ggatgaagacaaataaatattgttctagaattaatatgccttcttgtgagaaatcaccct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggatgaagacaaataaatattgttctagaattaatatgccttcttgtgagaaatcaccct 281

                                                                       
Query: 244 gcttacttagagattaataaagaaaaaatctctttaatatcatgtgtctggctctggcta 303
           |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 280 gcttacttagagattaataaaggaaaaatctctttaatagcatgtgtctggctctggcta 221

                           
Query: 304 agttccaaagaggagc 319
           ||||||||||||||||
Sbjct: 220 agttccaaagaggagc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)