Query= MSMg01no140_d20.b1 MSMg01no140_d20.b1 CHROMAT_FILE:
MSMg01no140_d20.b1 PHD_FILE: MSMg01no140_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:54 2005
(468 letters)
>mm_chr3_13914009_13914876
Length = 868
Score = 808 bits (418), Expect = 0.0
Identities = 448/468 (95%), Gaps = 17/468 (3%)
Strand = Plus / Minus
Query: 1 ttgggttttctttaagaaatctatactgctcagcatgcaggaggtaattcatacagtaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 745 ttgggttttctttaagaaatctatactgctcagcatgcaggaggtaattcgtacagtaaa 686
Query: 61 tacgttggaaggttgcctgtttaaccattgcaacaaagttgttcattgtcatgattcaat 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 685 tacgttggaaggttgcctgtttacccattgcaacaaagttgttcattgtcatgattcaat 626
Query: 121 caggaagtaattggaaaattcataaggacaacaacaacaacaaaaacaacaacaatgtaa 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 caggaagtaattggaaaattcataaggacaacaacaacaac-aaaacaacaacaatgtaa 567
Query: 181 tagcttttgcgggaaaataaaagaatatgtagaattcttcaatagaatattttgtgaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tagcttttgcgggaaaataaaagaatatgtagaattcttcaatagaatattttgtgaaat 507
Query: 241 accatctatatatttttagcaaatgatatagggactttaatcctataggaagatccacaa 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 accatctacatatttttagcaaatgatatagggactttaatcctataggaagatccacaa 447
Query: 301 gcaattaataactgcatagagagtggttgagccccttaagtagttatccaataccaagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcaattaataactgcatagagagtggttgagccccttaagtagttatccaataccaagtg 387
Query: 361 gttggtccaaaacacacacacacacacacacacacacacacacacacacacacacacaca 420
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 386 gttggtccaaa----------------acacacacacacacacacacacacacacacaca 343
Query: 421 cacaccactatactaaggaggttatatttacatatttatttccaaaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cacaccactatactaaggaggttatatttacatatttatttccaaaaa 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_d20.g1 MSMg01no140_d20.g1 CHROMAT_FILE:
MSMg01no140_d20.g1 PHD_FILE: MSMg01no140_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:54 2005
(588 letters)
>mm_chr3_13772244_13773231
Length = 988
Score = 1122 bits (580), Expect = 0.0
Identities = 586/588 (99%)
Strand = Plus / Plus
Query: 1 ttgaatattggatggattactattgttaggtaactctcttgaccatctgagttttttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatattggatggattactattgttaggtaactctcttgaccatctgagttttttatg 260
Query: 61 ttgttgttataactgttgttttgtgagcatctgagtgactctgaaattacaggtagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttgttataactgttgttttgtgagcatctgagtgactctgaaattacaggtagaaaa 320
Query: 121 ttaagacctactaaaacttgcggaagtatttatttactatgtgctaatttgtctatttca 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagacctactaaaacttgcggaaggatttatttactatgtgctaatttgtctatttca 380
Query: 181 aaactattttcctaaaccacaggaaagctgatttttaatttgtagttaatgtatcttgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactattttcctaaaccacaggaaagctgatttttaatttgtagttaatgtatcttgct 440
Query: 241 agcatttgagggtaagacaaatgaaaaagctatactacttacaatttccagaggaaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatttgagggtaagacaaatgaaaaagctatactacttacaatttccagaggaaatta 500
Query: 301 ttttgaaaaagaaaattgtacgtaattttagtgtgtatctaatagcaattacttaacctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgaaaaagaaaattgtacgtaattttagtgtgtatctaatagcaattacttaacctt 560
Query: 361 ttgtttgttgtttattcaaaatatacctaaaaccacaagaaccctaaacttttaaaactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtttgttgtttattcaaaatatacctaaaaccacaagaaccctaaacttttaaaactc 620
Query: 421 aaaacatattcattatctaagaatgaattaagcataaagccattatttctgattatatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaacatattcattatctaagaatgaattaagcataaagccattatttctgattatatgt 680
Query: 481 tgagatgattcaaagtttaaaattcaggtaatcttttgagaggatcaacctagtacaaag 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagatgattcaaagttttaaattcaggtaatcttttgagaggatcaacctagtacaaag 740
Query: 541 caacctgtttttaagtattataatacttaacatattaagtaaaacatt 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caacctgtttttaagtattataatacttaacatattaagtaaaacatt 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
