Query= MSMg01no140_e18.b1 MSMg01no140_e18.b1 CHROMAT_FILE:
MSMg01no140_e18.b1 PHD_FILE: MSMg01no140_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:59 2005
(606 letters)
>mm_chr3_80461016_80462021
Length = 1006
Score = 1127 bits (583), Expect = 0.0
Identities = 598/603 (99%), Gaps = 2/603 (0%)
Strand = Plus / Minus
Query: 5 gaattccataaccc-ttctcagggatgaggaacagaagggttgattggtgttaaagtggt 63
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gaattccataacccattc-aagggatgaggaacagaagggttgattggtgttaaagtggt 715
Query: 64 tttgggtgcatcttcggtataacaaaactgttatcttccagtaacttttattgggtagct 123
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 714 tttgggtgcatcttcgttataacaaaactgttatcttccagtaacttttattgggtaact 655
Query: 124 cgtatttaccattttatacttatgtataattgagtattcgtatgatgaaagtcagaggtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cgtatttaccattttatacttatgtataattgagtattcgtatgatgaaagtcagaggtg 595
Query: 184 ttatgggaagatacatgtacagcaaaaaaatggaatgaatagcctaatctatttgcctgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttatgggaagatacatgtacagcaaaaaaatggaatgaatagcctaatctatttgcctgt 535
Query: 244 gtagaaaattgcccatgctgcactccatgggaaccaaatttctctcccacttttaaaggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gtagaaaattgcccatgctgcactccatgggaaccaaatttctctcccacttttaaaggg 475
Query: 304 aagcactgacagtgtccaggtcccttaaacagtgtcaattacgtgattgtgcatgcttct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aagcactgacagtgtccaggtcccttaaacagtgtcaattacgtgattgtgcatgcttct 415
Query: 364 atggtctgcagtatcactgctgctttgccttaaatagcttattgcttactttctaaaaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atggtctgcagtatcactgctgctttgccttaaatagcttattgcttactttctaaaaat 355
Query: 424 ctattttattcgagtccttatttcttcagttgtttgaataagaaaccaagaactagaaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctattttattcgagtccttatttcttcagttgtttgaataagaaaccaagaactagaaaa 295
Query: 484 cacttagcccagactgcaaccactggtaacatgttgacctttgtgactataatccatggt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cacttagcccagactgcaaccactggtaacatgttgacctttgtgactataatccatggt 235
Query: 544 atttaagtttaggcaaatttttgaaaacactgtacgtgtgtgtgtgtgtgtgtgtgtgtg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atttaagtttaggcaaatttttgaaaacactgtacgtgtgtgtgtgtgtgtgtgtgtgtg 175
Query: 604 tgt 606
|||
Sbjct: 174 tgt 172
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 937 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 964
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 939 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 966
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 941 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 968
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 943 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 970
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 945 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 972
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 947 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 974
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 949 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 976
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 951 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 978
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 953 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 980
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 955 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 982
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 957 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 984
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 959 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 986
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 579 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 606
||||||||||||||||||||||||||||
Sbjct: 961 gtgtgtgtgtgtgtgtgtgtgtgtgtgt 988
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 36
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 14
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_e18.g1 MSMg01no140_e18.g1 CHROMAT_FILE:
MSMg01no140_e18.g1 PHD_FILE: MSMg01no140_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:59 2005
(611 letters)
>mm_chr3_80339340_80340349
Length = 1010
Score = 1135 bits (587), Expect = 0.0
Identities = 605/611 (99%), Gaps = 1/611 (0%)
Strand = Plus / Plus
Query: 1 caactagctacagaacttcaactaactccattggcttatgtgtttctgttatatactcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactagctacagaacttcaactaactccattggcttatgtgtttctgttatatactcct 260
Query: 61 tgttctgattttccaaatcaatgccaaaatatcttcaatttgatatctctcatgcttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttctgattttccaaatcaatgccaaaatatcttcaatttgatatctctcatgcttgaa 320
Query: 121 aaatttatgtatttttcagtggagatatttcctggttttccccaggaagcacattcgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aaatttatgtatttttcagtggagatatttcctggttttccccaggaagcatattcgaac 380
Query: 181 actgcaaagaatactgacatttacaattgatttaatttacataacattttctagagacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgcaaagaatactgacatttacaattgatttaatttacataacattttctagagacaa 440
Query: 241 gaaacaaacttcataggagaaatcacaatccattttatacagcacaatatcccaaataat 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacaaacttcaaaggagaaatcacaatccattttatacagcacaatatcccaaataat 500
Query: 301 aaataaatgtgtcattagcttagctcctctgctcactgtaaggtacattattcttcttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaataaatgtgtcattagcttagctcctctgctcactgtaaggtacattattcttcttgt 560
Query: 361 ttttttaataataaaatgaactaattattgttccagatgtgagacgatgtcaggatgaca 420
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttt-agtaataaaatgaactaattattgttccagatgtgagacgatgtcaggatgaca 619
Query: 421 ttttgaagcttgtctttatgaattcaatcaatcgctcattttctgtgttacagattgaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttgaagcttgtctttatgaattcaatcaatcgctcattttctgtgttacagattgaac 679
Query: 481 tacggtctcatttatgataaacacgtgctctcccaccagtctgaggaatcacttcgaatt 540
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 680 tagggtctcatttatgataaacacgtgctctcccaccagtctgaggaattacttcgaatt 739
Query: 541 ttttattttgacacgggtttttctgtatatcccaggtttgtgttgaaattctgattctcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttttattttgacacgggtttttctgtatatcccaggtttgtgttgaaattctgattctcc 799
Query: 601 tgcctaagctt 611
|||||||||||
Sbjct: 800 tgcctaagctt 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space: 601000
Effective search space used: 601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
